Project measure / variable:   Lake3   stationary1

ID, description, units MPD:19015   stationary1   rotarod habituation, latency to fall from stationary rotarod   [s]  trial1  
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure rotarod
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  STRAIN COMPARISON PLOT
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Lake3 - rotarod habituation, latency to fall from stationary rotarod trial1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means53.7   s 55.1   s
Median of the strain means53.5   s 57.0   s
SD of the strain means± 6.99 ± 6.31
Coefficient of variation (CV)0.130 0.114
Min–max range of strain means39.6   –   60.0   s 39.2   –   60.0   s
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 420.3931 420.3931 1.7477 0.1871
strain 22 11227.2343 510.3288 2.1216 0.0027
sex:strain 22 5575.1372 253.4153 1.0535 0.3976
Residuals 336 80821.95 240.5415


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 51.7 16.9   16 4.23 0.327 12.0, 60.0 -0.28
A/J m 57.0 8.49   8 3.0 0.149 36.0, 60.0 0.3
B6.A-Chr1 f 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.91
B6.A-Chr1 m 55.5 12.7   8 4.5 0.229 24.0, 60.0 0.06
B6.A-Chr10 f 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.91
B6.A-Chr10 m 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.78
B6.A-Chr11 f 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.91
B6.A-Chr11 m 60.0 0.0   10 0.0 0.0 60.0, 60.0 0.78
B6.A-Chr12 f 56.0 11.3   8 4.0 0.202 28.0, 60.0 0.33
B6.A-Chr12 m 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.78
B6.A-Chr13 f 50.6 21.0   5 9.4 0.415 13.0, 60.0 -0.44
B6.A-Chr13 m 45.0 25.7   7 9.71 0.571 4.0, 60.0 -1.6
B6.A-Chr14 f 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.91
B6.A-Chr14 m 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.78
B6.A-Chr15 f 52.6 20.9   8 7.38 0.396 1.0, 60.0 -0.15
B6.A-Chr15 m 53.4 18.7   8 6.62 0.351 7.0, 60.0 -0.27
B6.A-Chr16 f 53.2 19.1   8 6.75 0.359 6.0, 60.0 -0.07
B6.A-Chr16 m 53.5 18.4   8 6.5 0.344 8.0, 60.0 -0.25
B6.A-Chr17 f 40.0 27.7   8 9.79 0.692 2.0, 60.0 -1.96
B6.A-Chr17 m 46.2 25.5   8 9.0 0.55 5.0, 60.0 -1.41
B6.A-Chr18 f 47.6 23.0   8 8.15 0.484 6.0, 60.0 -0.87
B6.A-Chr18 m 54.1 16.6   8 5.87 0.307 13.0, 60.0 -0.16
B6.A-Chr19 f 47.6 23.0   8 8.12 0.482 8.0, 60.0 -0.87
B6.A-Chr19 m 42.5 24.7   8 8.72 0.58 7.0, 60.0 -2.0
B6.A-Chr2 f 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.91
B6.A-Chr2 m 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.78
B6.A-Chr3 f 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.91
B6.A-Chr3 m 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.78
B6.A-Chr4 f 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.91
B6.A-Chr4 m 39.2 28.7   8 10.1 0.73 2.0, 60.0 -2.52
B6.A-Chr5 f 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.91
B6.A-Chr5 m 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.78
B6.A-Chr6 f 48.6 21.2   8 7.5 0.436 10.0, 60.0 -0.72
B6.A-Chr6 m 54.5 15.6   8 5.5 0.285 16.0, 60.0 -0.1
B6.A-Chr7 f 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.91
B6.A-Chr7 m 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.78
B6.A-Chr8 f 39.6 23.6   8 8.35 0.596 3.0, 60.0 -2.01
B6.A-Chr8 m 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.78
B6.A-Chr9 f 52.6 17.8   8 6.31 0.339 9.0, 60.0 -0.15
B6.A-Chr9 m 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.78
B6.A-ChrX f 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.91
B6.A-ChrX m 52.6 20.9   8 7.38 0.396 1.0, 60.0 -0.4
B6.A-ChrY f 53.5 18.4   8 6.5 0.344 8.0, 60.0 -0.02
B6.A-ChrY m 60.0 0.0   8 0.0 0.0 60.0, 60.0 0.78
C57BL/6J f 40.7 25.9   16 6.46 0.635 2.0, 60.0 -1.86
C57BL/6J m 53.8 17.7   8 6.25 0.329 10.0, 60.0 -0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 51.6875 3.8774 59.3144 44.0606
A/J m 57.0 5.4834 67.7861 46.2139
B6.A-Chr1 f 60.0 5.4834 70.7861 49.2139
B6.A-Chr1 m 55.5 5.4834 66.2861 44.7139
B6.A-Chr10 f 60.0 5.4834 70.7861 49.2139
B6.A-Chr10 m 60.0 5.4834 70.7861 49.2139
B6.A-Chr11 f 60.0 5.4834 70.7861 49.2139
B6.A-Chr11 m 60.0 4.9045 69.6474 50.3526
B6.A-Chr12 f 56.0 5.4834 66.7861 45.2139
B6.A-Chr12 m 60.0 5.4834 70.7861 49.2139
B6.A-Chr13 f 50.6 6.936 64.2435 36.9565
B6.A-Chr13 m 45.0 5.862 56.5308 33.4692
B6.A-Chr14 f 60.0 5.4834 70.7861 49.2139
B6.A-Chr14 m 60.0 5.4834 70.7861 49.2139
B6.A-Chr15 f 52.625 5.4834 63.4111 41.8389
B6.A-Chr15 m 53.375 5.4834 64.1611 42.5889
B6.A-Chr16 f 53.25 5.4834 64.0361 42.4639
B6.A-Chr16 m 53.5 5.4834 64.2861 42.7139
B6.A-Chr17 f 40.0 5.4834 50.7861 29.2139
B6.A-Chr17 m 46.25 5.4834 57.0361 35.4639
B6.A-Chr18 f 47.625 5.4834 58.4111 36.8389
B6.A-Chr18 m 54.125 5.4834 64.9111 43.3389
B6.A-Chr19 f 47.625 5.4834 58.4111 36.8389
B6.A-Chr19 m 42.5 5.4834 53.2861 31.7139
B6.A-Chr2 f 60.0 5.4834 70.7861 49.2139
B6.A-Chr2 m 60.0 5.4834 70.7861 49.2139
B6.A-Chr3 f 60.0 5.4834 70.7861 49.2139
B6.A-Chr3 m 60.0 5.4834 70.7861 49.2139
B6.A-Chr4 f 60.0 5.4834 70.7861 49.2139
B6.A-Chr4 m 39.25 5.4834 50.0361 28.4639
B6.A-Chr5 f 60.0 5.4834 70.7861 49.2139
B6.A-Chr5 m 60.0 5.4834 70.7861 49.2139
B6.A-Chr6 f 48.625 5.4834 59.4111 37.8389
B6.A-Chr6 m 54.5 5.4834 65.2861 43.7139
B6.A-Chr7 f 60.0 5.4834 70.7861 49.2139
B6.A-Chr7 m 60.0 5.4834 70.7861 49.2139
B6.A-Chr8 f 39.625 5.4834 50.4111 28.8389
B6.A-Chr8 m 60.0 5.4834 70.7861 49.2139
B6.A-Chr9 f 52.625 5.4834 63.4111 41.8389
B6.A-Chr9 m 60.0 5.4834 70.7861 49.2139
B6.A-ChrX f 60.0 5.4834 70.7861 49.2139
B6.A-ChrX m 52.625 5.4834 63.4111 41.8389
B6.A-ChrY f 53.5 5.4834 64.2861 42.7139
B6.A-ChrY m 60.0 5.4834 70.7861 49.2139
C57BL/6J f 40.6875 3.8774 48.3144 33.0606
C57BL/6J m 53.75 5.4834 64.5361 42.9639


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 54.3437 3.3579 60.9489 47.7386
B6.A-Chr1 both 57.75 3.8774 65.3769 50.1231
B6.A-Chr10 both 60.0 3.8774 67.6269 52.3731
B6.A-Chr11 both 60.0 3.6784 67.2356 52.7644
B6.A-Chr12 both 58.0 3.8774 65.6269 50.3731
B6.A-Chr13 both 47.8 4.5407 56.7318 38.8682
B6.A-Chr14 both 60.0 3.8774 67.6269 52.3731
B6.A-Chr15 both 53.0 3.8774 60.6269 45.3731
B6.A-Chr16 both 53.375 3.8774 61.0019 45.7481
B6.A-Chr17 both 43.125 3.8774 50.7519 35.4981
B6.A-Chr18 both 50.875 3.8774 58.5019 43.2481
B6.A-Chr19 both 45.0625 3.8774 52.6894 37.4356
B6.A-Chr2 both 60.0 3.8774 67.6269 52.3731
B6.A-Chr3 both 60.0 3.8774 67.6269 52.3731
B6.A-Chr4 both 49.625 3.8774 57.2519 41.9981
B6.A-Chr5 both 60.0 3.8774 67.6269 52.3731
B6.A-Chr6 both 51.5625 3.8774 59.1894 43.9356
B6.A-Chr7 both 60.0 3.8774 67.6269 52.3731
B6.A-Chr8 both 49.8125 3.8774 57.4394 42.1856
B6.A-Chr9 both 56.3125 3.8774 63.9394 48.6856
B6.A-ChrX both 56.3125 3.8774 63.9394 48.6856
B6.A-ChrY both 56.75 3.8774 64.3769 49.1231
C57BL/6J both 47.2188 3.3579 53.8239 40.6136




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA