Project measure / variable:   Lake3   rearing_perimeter

ID, description, units MPD:19010   rearing_perimeter   number of rearings in the perimeter in 5 min test   [n]  
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure hole board test
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  STRAIN COMPARISON PLOT
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Lake3 - number of rearings in the perimeter in 5 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means8.44   n 9.37   n
Median of the strain means9.12   n 9.50   n
SD of the strain means± 3.94 ± 3.82
Coefficient of variation (CV)0.467 0.407
Min–max range of strain means0.375   –   15.8   n 2.25   –   19.9   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 146.9635 146.9635 6.1776 0.0134
strain 22 3930.8824 178.6765 7.5106 < 0.0001
sex:strain 22 1583.4532 71.9751 3.0255 < 0.0001
Residuals 336 7993.3946 23.7899


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.75 1.29   16 0.323 1.72 -1.95
A/J m 2.25 4.3   8 1.52 1.91 -1.87
B6.A-Chr1 f 4.38 1.77   8 0.625 0.404 2.0, 8.0 -1.03
B6.A-Chr1 m 6.88 4.88   8 1.73 0.71 2.0, 18.0 -0.65
B6.A-Chr10 f 6.38 4.75   8 1.68 0.745 -0.52
B6.A-Chr10 m 8.0 7.95   8 2.81 0.993 -0.36
B6.A-Chr11 f 9.12 5.3   8 1.88 0.581 0.17
B6.A-Chr11 m 7.6 4.12   10 1.3 0.541 1.0, 17.0 -0.46
B6.A-Chr12 f 9.25 3.81   8 1.35 0.412 4.0, 16.0 0.21
B6.A-Chr12 m 8.75 3.62   8 1.28 0.413 5.0, 15.0 -0.16
B6.A-Chr13 f 14.6 8.91   5 3.98 0.61 6.0, 27.0 1.56
B6.A-Chr13 m 19.9 5.49   7 2.08 0.276 14.0, 29.0 2.76
B6.A-Chr14 f 8.38 1.77   8 0.625 0.211 5.0, 10.0 -0.01
B6.A-Chr14 m 10.9 6.31   8 2.23 0.58 0.4
B6.A-Chr15 f 9.5 5.04   8 1.78 0.531 3.0, 17.0 0.27
B6.A-Chr15 m 11.5 5.15   8 1.82 0.448 4.0, 18.0 0.56
B6.A-Chr16 f 6.5 4.34   8 1.54 0.668 2.0, 14.0 -0.49
B6.A-Chr16 m 8.62 7.01   8 2.48 0.813 -0.2
B6.A-Chr17 f 12.0 5.18   8 1.83 0.432 6.0, 20.0 0.9
B6.A-Chr17 m 12.4 5.63   8 1.99 0.455 2.0, 20.0 0.79
B6.A-Chr18 f 5.75 4.5   8 1.59 0.782 2.0, 15.0 -0.68
B6.A-Chr18 m 6.62 3.02   8 1.07 0.456 3.0, 12.0 -0.72
B6.A-Chr19 f 15.8 4.4   8 1.56 0.279 7.0, 22.0 1.87
B6.A-Chr19 m 11.4 5.01   8 1.77 0.441 3.0, 18.0 0.53
B6.A-Chr2 f 9.75 5.5   8 1.94 0.564 2.0, 18.0 0.33
B6.A-Chr2 m 12.9 7.24   8 2.56 0.562 5.0, 25.0 0.92
B6.A-Chr3 f 7.88 3.36   8 1.19 0.426 3.0, 14.0 -0.14
B6.A-Chr3 m 9.5 3.93   8 1.39 0.413 5.0, 15.0 0.03
B6.A-Chr4 f 0.375 1.06   8 0.375 2.83 -2.04
B6.A-Chr4 m 12.5 6.41   8 2.27 0.513 1.0, 21.0 0.82
B6.A-Chr5 f 13.2 3.45   8 1.22 0.261 8.0, 17.0 1.21
B6.A-Chr5 m 3.38 4.03   8 1.43 1.2 -1.57
B6.A-Chr6 f 2.12 3.0   8 1.06 1.41 -1.6
B6.A-Chr6 m 7.12 4.7   8 1.66 0.66 1.0, 15.0 -0.59
B6.A-Chr7 f 10.6 7.78   8 2.75 0.732 2.0, 26.0 0.55
B6.A-Chr7 m 5.38 3.38   8 1.19 0.628 -1.05
B6.A-Chr8 f 10.0 5.45   8 1.93 0.545 3.0, 20.0 0.4
B6.A-Chr8 m 9.75 4.03   8 1.42 0.413 5.0, 16.0 0.1
B6.A-Chr9 f 8.38 3.42   8 1.21 0.408 4.0, 14.0 -0.01
B6.A-Chr9 m 5.12 2.03   8 0.718 0.396 2.0, 8.0 -1.11
B6.A-ChrX f 10.9 4.73   8 1.67 0.435 3.0, 16.0 0.62
B6.A-ChrX m 10.1 3.04   8 1.08 0.301 5.0, 14.0 0.19
B6.A-ChrY f 9.5 3.25   8 1.15 0.342 6.0, 15.0 0.27
B6.A-ChrY m 13.4 7.67   8 2.71 0.574 3.0, 25.0 1.06
C57BL/6J f 8.94 6.9   16 1.73 0.772 0.13
C57BL/6J m 11.6 3.93   8 1.39 0.338 7.0, 17.0 0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.75 1.2194 3.1486 0.0
A/J m 2.25 1.7245 5.6421 0.0
B6.A-Chr1 f 4.375 1.7245 7.7671 0.9829
B6.A-Chr1 m 6.875 1.7245 10.2671 3.4829
B6.A-Chr10 f 6.375 1.7245 9.7671 2.9829
B6.A-Chr10 m 8.0 1.7245 11.3921 4.6079
B6.A-Chr11 f 9.125 1.7245 12.5171 5.7329
B6.A-Chr11 m 7.6 1.5424 10.634 4.566
B6.A-Chr12 f 9.25 1.7245 12.6421 5.8579
B6.A-Chr12 m 8.75 1.7245 12.1421 5.3579
B6.A-Chr13 f 14.6 2.1813 18.8907 10.3093
B6.A-Chr13 m 19.8571 1.8435 23.4834 16.2309
B6.A-Chr14 f 8.375 1.7245 11.7671 4.9829
B6.A-Chr14 m 10.875 1.7245 14.2671 7.4829
B6.A-Chr15 f 9.5 1.7245 12.8921 6.1079
B6.A-Chr15 m 11.5 1.7245 14.8921 8.1079
B6.A-Chr16 f 6.5 1.7245 9.8921 3.1079
B6.A-Chr16 m 8.625 1.7245 12.0171 5.2329
B6.A-Chr17 f 12.0 1.7245 15.3921 8.6079
B6.A-Chr17 m 12.375 1.7245 15.7671 8.9829
B6.A-Chr18 f 5.75 1.7245 9.1421 2.3579
B6.A-Chr18 m 6.625 1.7245 10.0171 3.2329
B6.A-Chr19 f 15.75 1.7245 19.1421 12.3579
B6.A-Chr19 m 11.375 1.7245 14.7671 7.9829
B6.A-Chr2 f 9.75 1.7245 13.1421 6.3579
B6.A-Chr2 m 12.875 1.7245 16.2671 9.4829
B6.A-Chr3 f 7.875 1.7245 11.2671 4.4829
B6.A-Chr3 m 9.5 1.7245 12.8921 6.1079
B6.A-Chr4 f 0.375 1.7245 3.7671 0.0
B6.A-Chr4 m 12.5 1.7245 15.8921 9.1079
B6.A-Chr5 f 13.25 1.7245 16.6421 9.8579
B6.A-Chr5 m 3.375 1.7245 6.7671 0.0
B6.A-Chr6 f 2.125 1.7245 5.5171 0.0
B6.A-Chr6 m 7.125 1.7245 10.5171 3.7329
B6.A-Chr7 f 10.625 1.7245 14.0171 7.2329
B6.A-Chr7 m 5.375 1.7245 8.7671 1.9829
B6.A-Chr8 f 10.0 1.7245 13.3921 6.6079
B6.A-Chr8 m 9.75 1.7245 13.1421 6.3579
B6.A-Chr9 f 8.375 1.7245 11.7671 4.9829
B6.A-Chr9 m 5.125 1.7245 8.5171 1.7329
B6.A-ChrX f 10.875 1.7245 14.2671 7.4829
B6.A-ChrX m 10.125 1.7245 13.5171 6.7329
B6.A-ChrY f 9.5 1.7245 12.8921 6.1079
B6.A-ChrY m 13.375 1.7245 16.7671 9.9829
C57BL/6J f 8.9375 1.2194 11.3361 6.5389
C57BL/6J m 11.625 1.7245 15.0171 8.2329


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 1.5 1.056 3.5772 0.0
B6.A-Chr1 both 5.625 1.2194 8.0236 3.2264
B6.A-Chr10 both 7.1875 1.2194 9.5861 4.7889
B6.A-Chr11 both 8.3625 1.1568 10.638 6.087
B6.A-Chr12 both 9.0 1.2194 11.3986 6.6014
B6.A-Chr13 both 17.2286 1.428 20.0375 14.4197
B6.A-Chr14 both 9.625 1.2194 12.0236 7.2264
B6.A-Chr15 both 10.5 1.2194 12.8986 8.1014
B6.A-Chr16 both 7.5625 1.2194 9.9611 5.1639
B6.A-Chr17 both 12.1875 1.2194 14.5861 9.7889
B6.A-Chr18 both 6.1875 1.2194 8.5861 3.7889
B6.A-Chr19 both 13.5625 1.2194 15.9611 11.1639
B6.A-Chr2 both 11.3125 1.2194 13.7111 8.9139
B6.A-Chr3 both 8.6875 1.2194 11.0861 6.2889
B6.A-Chr4 both 6.4375 1.2194 8.8361 4.0389
B6.A-Chr5 both 8.3125 1.2194 10.7111 5.9139
B6.A-Chr6 both 4.625 1.2194 7.0236 2.2264
B6.A-Chr7 both 8.0 1.2194 10.3986 5.6014
B6.A-Chr8 both 9.875 1.2194 12.2736 7.4764
B6.A-Chr9 both 6.75 1.2194 9.1486 4.3514
B6.A-ChrX both 10.5 1.2194 12.8986 8.1014
B6.A-ChrY both 11.4375 1.2194 13.8361 9.0389
C57BL/6J both 10.2812 1.056 12.3585 8.204




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA