Project measure / variable:   Lake3   rearing_arena

ID, description, units MPD:19009   rearing_arena   number of rearings in the arena in 5 min test   [n]  
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure hole board test
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  STRAIN COMPARISON PLOT
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Lake3 - number of rearings in the arena in 5 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.905   n 0.792   n
Median of the strain means0.250   n 0.375   n
SD of the strain means± 1.71 ± 0.949
Coefficient of variation (CV)1.89 1.20
Min–max range of strain means0   –   7.88   n 0   –   3.25   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1299 0.1299 0.0527 0.8186
strain 22 328.7488 14.9431 6.0568 < 0.0001
sex:strain 22 356.0985 16.1863 6.5607 < 0.0001
Residuals 336 828.9625 2.4672


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.0 0.0   16 0.0 0.0 -0.53
A/J m 0.0 0.0   8 0.0 0.0 -0.84
B6.A-Chr1 f 0.0 0.0   8 0.0 0.0 -0.53
B6.A-Chr1 m 0.375 1.06   8 0.375 2.83 -0.44
B6.A-Chr10 f 0.25 0.463   8 0.164 1.85 -0.38
B6.A-Chr10 m 1.0 1.31   8 0.463 1.31 0.22
B6.A-Chr11 f 0.0 0.0   8 0.0 0.0 -0.53
B6.A-Chr11 m 2.1 3.21   10 1.02 1.53 1.38
B6.A-Chr12 f 0.625 0.916   8 0.324 1.47 -0.16
B6.A-Chr12 m 1.5 2.27   8 0.802 1.51 0.75
B6.A-Chr13 f 0.0 0.0   5 0.0 0.0 -0.53
B6.A-Chr13 m 0.0 0.0   7 0.0 0.0 -0.84
B6.A-Chr14 f 0.125 0.354   8 0.125 2.83 -0.46
B6.A-Chr14 m 0.0 0.0   8 0.0 0.0 -0.84
B6.A-Chr15 f 1.25 1.28   8 0.453 1.03 0.2
B6.A-Chr15 m 1.5 2.0   8 0.707 1.33 0.75
B6.A-Chr16 f 0.0 0.0   8 0.0 0.0 -0.53
B6.A-Chr16 m 2.12 2.95   8 1.04 1.39 1.4
B6.A-Chr17 f 0.0 0.0   8 0.0 0.0 -0.53
B6.A-Chr17 m 0.25 0.707   8 0.25 2.83 -0.57
B6.A-Chr18 f 0.0 0.0   8 0.0 0.0 -0.53
B6.A-Chr18 m 0.0 0.0   8 0.0 0.0 -0.84
B6.A-Chr19 f 1.0 1.41   8 0.5 1.41 0.06
B6.A-Chr19 m 0.0 0.0   8 0.0 0.0 -0.84
B6.A-Chr2 f 0.375 0.744   8 0.263 1.98 -0.31
B6.A-Chr2 m 0.5 1.07   8 0.378 2.14 -0.31
B6.A-Chr3 f 3.0 4.0   8 1.41 1.33 1.22
B6.A-Chr3 m 1.88 2.47   8 0.875 1.32 1.15
B6.A-Chr4 f 7.88 2.36   8 0.833 0.299 4.0, 10.0 4.08
B6.A-Chr4 m 0.125 0.354   8 0.125 2.83 -0.7
B6.A-Chr5 f 0.25 0.463   8 0.164 1.85 -0.38
B6.A-Chr5 m 3.25 3.58   8 1.26 1.1 2.59
B6.A-Chr6 f 1.62 1.92   8 0.68 1.18 0.42
B6.A-Chr6 m 0.125 0.354   8 0.125 2.83 -0.7
B6.A-Chr7 f 1.88 4.52   8 1.6 2.41 0.57
B6.A-Chr7 m 0.5 0.756   8 0.267 1.51 -0.31
B6.A-Chr8 f 1.5 1.69   8 0.598 1.13 0.35
B6.A-Chr8 m 1.0 1.07   8 0.378 1.07 0.22
B6.A-Chr9 f 0.5 0.756   8 0.267 1.51 -0.24
B6.A-Chr9 m 2.0 2.45   8 0.866 1.22 1.27
B6.A-ChrX f 0.0 0.0   8 0.0 0.0 -0.53
B6.A-ChrX m 0.0 0.0   8 0.0 0.0 -0.84
B6.A-ChrY f 0.5 1.07   8 0.378 2.14 -0.24
B6.A-ChrY m 0.0 0.0   8 0.0 0.0 -0.84
C57BL/6J f 0.0625 0.25   16 0.0625 4.0 -0.49
C57BL/6J m 0.0 0.0   8 0.0 0.0 -0.84


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.0 0.3927 0.7724 -0.7724
A/J m 0.0 0.5553 1.0924 -1.0924
B6.A-Chr1 f 0.0 0.5553 1.0924 -1.0924
B6.A-Chr1 m 0.375 0.5553 1.4674 -0.7174
B6.A-Chr10 f 0.25 0.5553 1.3424 -0.8424
B6.A-Chr10 m 1.0 0.5553 2.0924 -0.0924
B6.A-Chr11 f 0.0 0.5553 1.0924 -1.0924
B6.A-Chr11 m 2.1 0.4967 3.077 1.123
B6.A-Chr12 f 0.625 0.5553 1.7174 -0.4674
B6.A-Chr12 m 1.5 0.5553 2.5924 0.4076
B6.A-Chr13 f 0.0 0.7024 1.3817 -1.3817
B6.A-Chr13 m 0.0 0.5937 1.1678 -1.1678
B6.A-Chr14 f 0.125 0.5553 1.2174 -0.9674
B6.A-Chr14 m 0.0 0.5553 1.0924 -1.0924
B6.A-Chr15 f 1.25 0.5553 2.3424 0.1576
B6.A-Chr15 m 1.5 0.5553 2.5924 0.4076
B6.A-Chr16 f 0.0 0.5553 1.0924 -1.0924
B6.A-Chr16 m 2.125 0.5553 3.2174 1.0326
B6.A-Chr17 f 0.0 0.5553 1.0924 -1.0924
B6.A-Chr17 m 0.25 0.5553 1.3424 -0.8424
B6.A-Chr18 f 0.0 0.5553 1.0924 -1.0924
B6.A-Chr18 m 0.0 0.5553 1.0924 -1.0924
B6.A-Chr19 f 1.0 0.5553 2.0924 -0.0924
B6.A-Chr19 m 0.0 0.5553 1.0924 -1.0924
B6.A-Chr2 f 0.375 0.5553 1.4674 -0.7174
B6.A-Chr2 m 0.5 0.5553 1.5924 -0.5924
B6.A-Chr3 f 3.0 0.5553 4.0924 1.9076
B6.A-Chr3 m 1.875 0.5553 2.9674 0.7826
B6.A-Chr4 f 7.875 0.5553 8.9674 6.7826
B6.A-Chr4 m 0.125 0.5553 1.2174 -0.9674
B6.A-Chr5 f 0.25 0.5553 1.3424 -0.8424
B6.A-Chr5 m 3.25 0.5553 4.3424 2.1576
B6.A-Chr6 f 1.625 0.5553 2.7174 0.5326
B6.A-Chr6 m 0.125 0.5553 1.2174 -0.9674
B6.A-Chr7 f 1.875 0.5553 2.9674 0.7826
B6.A-Chr7 m 0.5 0.5553 1.5924 -0.5924
B6.A-Chr8 f 1.5 0.5553 2.5924 0.4076
B6.A-Chr8 m 1.0 0.5553 2.0924 -0.0924
B6.A-Chr9 f 0.5 0.5553 1.5924 -0.5924
B6.A-Chr9 m 2.0 0.5553 3.0924 0.9076
B6.A-ChrX f 0.0 0.5553 1.0924 -1.0924
B6.A-ChrX m 0.0 0.5553 1.0924 -1.0924
B6.A-ChrY f 0.5 0.5553 1.5924 -0.5924
B6.A-ChrY m 0.0 0.5553 1.0924 -1.0924
C57BL/6J f 0.0625 0.3927 0.8349 -0.7099
C57BL/6J m 0.0 0.5553 1.0924 -1.0924


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.0 0.3401 0.6689 -0.6689
B6.A-Chr1 both 0.1875 0.3927 0.9599 -0.5849
B6.A-Chr10 both 0.625 0.3927 1.3974 -0.1474
B6.A-Chr11 both 1.05 0.3725 1.7828 0.3172
B6.A-Chr12 both 1.0625 0.3927 1.8349 0.2901
B6.A-Chr13 both 0.0 0.4599 0.9046 -0.9046
B6.A-Chr14 both 0.0625 0.3927 0.8349 -0.7099
B6.A-Chr15 both 1.375 0.3927 2.1474 0.6026
B6.A-Chr16 both 1.0625 0.3927 1.8349 0.2901
B6.A-Chr17 both 0.125 0.3927 0.8974 -0.6474
B6.A-Chr18 both 0.0 0.3927 0.7724 -0.7724
B6.A-Chr19 both 0.5 0.3927 1.2724 -0.2724
B6.A-Chr2 both 0.4375 0.3927 1.2099 -0.3349
B6.A-Chr3 both 2.4375 0.3927 3.2099 1.6651
B6.A-Chr4 both 4.0 0.3927 4.7724 3.2276
B6.A-Chr5 both 1.75 0.3927 2.5224 0.9776
B6.A-Chr6 both 0.875 0.3927 1.6474 0.1026
B6.A-Chr7 both 1.1875 0.3927 1.9599 0.4151
B6.A-Chr8 both 1.25 0.3927 2.0224 0.4776
B6.A-Chr9 both 1.25 0.3927 2.0224 0.4776
B6.A-ChrX both 0.0 0.3927 0.7724 -0.7724
B6.A-ChrY both 0.25 0.3927 1.0224 -0.5224
C57BL/6J both 0.0313 0.3401 0.7002 -0.6377




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA