Phenotype measure:   Lake3   hole_visit

ID, description, units MPD:19008   hole_visit   number of hole visits in 5 min test   [n]
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure hole board test
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake3 - number of hole visits in 5 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means33.6   n 35.7   n
Median of the strain means34.4   n 36.0   n
SD of the strain means± 8.52 ± 9.56
Coefficient of variation (CV)0.253 0.268
Min–max range of strain means14.8   –   50.4   n 17.6   –   51.2   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 561.1836 561.1836 2.7363 0.099
strain 22 21203.034 963.7743 4.6994 < 0.0001
sex:strain 22 7758.4186 352.6554 1.7195 0.0243
Residuals 336 68908.8821 205.086


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 23.6 14.1   16 3.53 0.599 1.0, 55.0 -1.18
A/J m 27.8 16.3   8 5.77 0.588 2.0, 45.0 -0.82
B6.A-Chr1 f 29.8 17.1   8 6.03 0.573 16.0, 58.0 -0.45
B6.A-Chr1 m 18.6 14.4   8 5.09 0.773 4.0, 49.0 -1.79
B6.A-Chr10 f 31.5 19.6   8 6.93 0.622 10.0, 56.0 -0.25
B6.A-Chr10 m 17.6 11.4   8 4.04 0.649 3.0, 33.0 -1.89
B6.A-Chr11 f 36.8 13.8   8 4.86 0.374 15.0, 54.0 0.37
B6.A-Chr11 m 31.7 10.9   10 3.44 0.343 13.0, 48.0 -0.42
B6.A-Chr12 f 37.5 10.0   8 3.54 0.267 23.0, 51.0 0.45
B6.A-Chr12 m 36.0 11.9   8 4.2 0.33 25.0, 56.0 0.03
B6.A-Chr13 f 14.8 8.67   5 3.88 0.586 7.0, 28.0 -2.21
B6.A-Chr13 m 34.1 9.37   7 3.54 0.274 23.0, 49.0 -0.17
B6.A-Chr14 f 29.5 8.05   8 2.85 0.273 22.0, 43.0 -0.48
B6.A-Chr14 m 39.6 21.8   8 7.73 0.551 7.0, 80.0 0.41
B6.A-Chr15 f 34.4 17.0   8 6.01 0.495 12.0, 54.0 0.09
B6.A-Chr15 m 36.8 13.5   8 4.78 0.368 20.0, 57.0 0.12
B6.A-Chr16 f 38.5 8.37   8 2.96 0.217 25.0, 52.0 0.57
B6.A-Chr16 m 48.6 12.4   8 4.39 0.255 33.0, 68.0 1.35
B6.A-Chr17 f 36.9 15.7   8 5.53 0.424 9.0, 56.0 0.38
B6.A-Chr17 m 40.0 20.2   8 7.14 0.505 18.0, 85.0 0.45
B6.A-Chr18 f 22.6 12.9   8 4.56 0.57 5.0, 37.0 -1.29
B6.A-Chr18 m 27.2 9.32   8 3.29 0.342 16.0, 46.0 -0.89
B6.A-Chr19 f 40.4 14.2   8 5.02 0.352 23.0, 66.0 0.79
B6.A-Chr19 m 29.0 18.8   8 6.63 0.647 10.0, 55.0 -0.7
B6.A-Chr2 f 45.4 22.5   8 7.94 0.495 6.0, 64.0 1.38
B6.A-Chr2 m 46.8 14.3   8 5.07 0.307 25.0, 64.0 1.16
B6.A-Chr3 f 50.4 16.6   8 5.86 0.329 29.0, 78.0 1.97
B6.A-Chr3 m 51.2 13.5   8 4.78 0.264 28.0, 67.0 1.62
B6.A-Chr4 f 29.6 13.1   8 4.62 0.441 15.0, 48.0 -0.47
B6.A-Chr4 m 47.0 14.9   8 5.27 0.317 31.0, 72.0 1.18
B6.A-Chr5 f 45.1 18.3   8 6.47 0.405 19.0, 71.0 1.35
B6.A-Chr5 m 32.5 10.8   8 3.83 0.333 22.0, 53.0 -0.33
B6.A-Chr6 f 23.2 10.8   8 3.8 0.463 9.0, 36.0 -1.22
B6.A-Chr6 m 18.9 16.2   8 5.72 0.857 2.0, 55.0 -1.76
B6.A-Chr7 f 37.5 7.76   8 2.75 0.207 24.0, 49.0 0.45
B6.A-Chr7 m 32.6 15.1   8 5.36 0.464 9.0, 56.0 -0.32
B6.A-Chr8 f 27.2 20.2   8 7.15 0.742 6.0, 57.0 -0.75
B6.A-Chr8 m 44.9 9.25   8 3.27 0.206 32.0, 61.0 0.96
B6.A-Chr9 f 41.2 10.1   8 3.55 0.244 28.0, 56.0 0.89
B6.A-Chr9 m 42.9 19.4   8 6.85 0.452 17.0, 68.0 0.76
B6.A-ChrX f 39.5 13.3   8 4.71 0.337 26.0, 64.0 0.69
B6.A-ChrX m 43.2 9.29   8 3.28 0.215 32.0, 57.0 0.79
B6.A-ChrY f 31.4 9.75   8 3.45 0.311 14.0, 45.0 -0.26
B6.A-ChrY m 35.9 12.4   8 4.37 0.344 23.0, 62.0 0.02
C57BL/6J f 26.7 14.1   16 3.52 0.528 3.0, 49.0 -0.81
C57BL/6J m 37.8 12.4   8 4.39 0.329 22.0, 54.0 0.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 23.5625 3.5802 30.6049 16.5201
A/J m 27.75 5.0632 37.7095 17.7905
B6.A-Chr1 f 29.75 5.0632 39.7095 19.7905
B6.A-Chr1 m 18.625 5.0632 28.5845 8.6655
B6.A-Chr10 f 31.5 5.0632 41.4595 21.5405
B6.A-Chr10 m 17.625 5.0632 27.5845 7.6655
B6.A-Chr11 f 36.75 5.0632 46.7095 26.7905
B6.A-Chr11 m 31.7 4.5286 40.6081 22.7919
B6.A-Chr12 f 37.5 5.0632 47.4595 27.5405
B6.A-Chr12 m 36.0 5.0632 45.9595 26.0405
B6.A-Chr13 f 14.8 6.4045 27.3979 2.2021
B6.A-Chr13 m 34.1429 5.4128 44.79 23.4957
B6.A-Chr14 f 29.5 5.0632 39.4595 19.5405
B6.A-Chr14 m 39.625 5.0632 49.5845 29.6655
B6.A-Chr15 f 34.375 5.0632 44.3345 24.4155
B6.A-Chr15 m 36.75 5.0632 46.7095 26.7905
B6.A-Chr16 f 38.5 5.0632 48.4595 28.5405
B6.A-Chr16 m 48.625 5.0632 58.5845 38.6655
B6.A-Chr17 f 36.875 5.0632 46.8345 26.9155
B6.A-Chr17 m 40.0 5.0632 49.9595 30.0405
B6.A-Chr18 f 22.625 5.0632 32.5845 12.6655
B6.A-Chr18 m 27.25 5.0632 37.2095 17.2905
B6.A-Chr19 f 40.375 5.0632 50.3345 30.4155
B6.A-Chr19 m 29.0 5.0632 38.9595 19.0405
B6.A-Chr2 f 45.375 5.0632 55.3345 35.4155
B6.A-Chr2 m 46.75 5.0632 56.7095 36.7905
B6.A-Chr3 f 50.375 5.0632 60.3345 40.4155
B6.A-Chr3 m 51.25 5.0632 61.2095 41.2905
B6.A-Chr4 f 29.625 5.0632 39.5845 19.6655
B6.A-Chr4 m 47.0 5.0632 56.9595 37.0405
B6.A-Chr5 f 45.125 5.0632 55.0845 35.1655
B6.A-Chr5 m 32.5 5.0632 42.4595 22.5405
B6.A-Chr6 f 23.25 5.0632 33.2095 13.2905
B6.A-Chr6 m 18.875 5.0632 28.8345 8.9155
B6.A-Chr7 f 37.5 5.0632 47.4595 27.5405
B6.A-Chr7 m 32.625 5.0632 42.5845 22.6655
B6.A-Chr8 f 27.25 5.0632 37.2095 17.2905
B6.A-Chr8 m 44.875 5.0632 54.8345 34.9155
B6.A-Chr9 f 41.25 5.0632 51.2095 31.2905
B6.A-Chr9 m 42.875 5.0632 52.8345 32.9155
B6.A-ChrX f 39.5 5.0632 49.4595 29.5405
B6.A-ChrX m 43.25 5.0632 53.2095 33.2905
B6.A-ChrY f 31.375 5.0632 41.3345 21.4155
B6.A-ChrY m 35.875 5.0632 45.8345 25.9155
C57BL/6J f 26.6875 3.5802 33.7299 19.6451
C57BL/6J m 37.75 5.0632 47.7095 27.7905


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 25.6563 3.1005 31.7552 19.5573
B6.A-Chr1 both 24.1875 3.5802 31.2299 17.1451
B6.A-Chr10 both 24.5625 3.5802 31.6049 17.5201
B6.A-Chr11 both 34.225 3.3965 40.906 27.544
B6.A-Chr12 both 36.75 3.5802 43.7924 29.7076
B6.A-Chr13 both 24.4714 4.1927 32.7187 16.2242
B6.A-Chr14 both 34.5625 3.5802 41.6049 27.5201
B6.A-Chr15 both 35.5625 3.5802 42.6049 28.5201
B6.A-Chr16 both 43.5625 3.5802 50.6049 36.5201
B6.A-Chr17 both 38.4375 3.5802 45.4799 31.3951
B6.A-Chr18 both 24.9375 3.5802 31.9799 17.8951
B6.A-Chr19 both 34.6875 3.5802 41.7299 27.6451
B6.A-Chr2 both 46.0625 3.5802 53.1049 39.0201
B6.A-Chr3 both 50.8125 3.5802 57.8549 43.7701
B6.A-Chr4 both 38.3125 3.5802 45.3549 31.2701
B6.A-Chr5 both 38.8125 3.5802 45.8549 31.7701
B6.A-Chr6 both 21.0625 3.5802 28.1049 14.0201
B6.A-Chr7 both 35.0625 3.5802 42.1049 28.0201
B6.A-Chr8 both 36.0625 3.5802 43.1049 29.0201
B6.A-Chr9 both 42.0625 3.5802 49.1049 35.0201
B6.A-ChrX both 41.375 3.5802 48.4174 34.3326
B6.A-ChrY both 33.625 3.5802 40.6674 26.5826
C57BL/6J both 32.2188 3.1005 38.3177 26.1198




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA