Phenotype measure:   Lake3   head_dunk

ID, description, units MPD:19007   head_dunk   number of head dunks in 5 min test   [n]
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure hole board test
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake3 - number of head dunks in 5 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means16.5   n 16.2   n
Median of the strain means15.6   n 15.6   n
SD of the strain means± 6.40 ± 6.27
Coefficient of variation (CV)0.389 0.386
Min–max range of strain means7.88   –   32.5   n 6.12   –   31.8   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 38.5013 38.5013 0.4656 0.4955
strain 22 10497.0917 477.1405 5.7696 < 0.0001
sex:strain 22 3917.5887 178.0722 2.1533 0.0022
Residuals 336 27786.6821 82.6985


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 23.8 17.6   16 4.41 0.741 1.15
A/J m 31.8 19.9   8 7.03 0.626 1.0, 57.0 2.48
B6.A-Chr1 f 14.9 8.56   8 3.03 0.575 3.0, 33.0 -0.24
B6.A-Chr1 m 8.5 5.1   8 1.8 0.6 1.0, 16.0 -1.24
B6.A-Chr10 f 11.8 8.28   8 2.93 0.704 1.0, 24.0 -0.73
B6.A-Chr10 m 6.12 6.03   8 2.13 0.985 -1.62
B6.A-Chr11 f 24.9 20.3   8 7.19 0.818 8.0, 67.0 1.32
B6.A-Chr11 m 15.6 4.3   10 1.36 0.276 8.0, 22.0 -0.1
B6.A-Chr12 f 7.88 4.19   8 1.48 0.532 3.0, 14.0 -1.34
B6.A-Chr12 m 10.6 3.42   8 1.21 0.322 6.0, 15.0 -0.9
B6.A-Chr13 f 10.8 5.67   5 2.54 0.525 6.0, 17.0 -0.89
B6.A-Chr13 m 14.9 10.3   7 3.88 0.691 4.0, 36.0 -0.21
B6.A-Chr14 f 11.2 2.76   8 0.977 0.246 7.0, 16.0 -0.82
B6.A-Chr14 m 15.8 3.77   8 1.33 0.239 11.0, 21.0 -0.07
B6.A-Chr15 f 9.0 4.21   8 1.49 0.468 3.0, 14.0 -1.17
B6.A-Chr15 m 13.0 7.05   8 2.49 0.542 5.0, 23.0 -0.52
B6.A-Chr16 f 32.5 9.32   8 3.3 0.287 17.0, 45.0 2.51
B6.A-Chr16 m 25.1 13.9   8 4.91 0.553 11.0, 48.0 1.41
B6.A-Chr17 f 15.9 6.58   8 2.33 0.414 7.0, 30.0 -0.09
B6.A-Chr17 m 18.0 6.68   8 2.36 0.371 9.0, 27.0 0.28
B6.A-Chr18 f 16.4 12.6   8 4.45 0.769 2.0, 39.0 -0.01
B6.A-Chr18 m 14.5 6.37   8 2.25 0.439 9.0, 28.0 -0.28
B6.A-Chr19 f 15.6 4.81   8 1.7 0.308 8.0, 24.0 -0.14
B6.A-Chr19 m 13.6 11.2   8 3.97 0.825 2.0, 30.0 -0.42
B6.A-Chr2 f 17.9 8.22   8 2.91 0.46 3.0, 29.0 0.22
B6.A-Chr2 m 19.8 5.44   8 1.92 0.276 10.0, 26.0 0.57
B6.A-Chr3 f 23.9 14.2   8 5.03 0.595 10.0, 50.0 1.16
B6.A-Chr3 m 16.5 7.6   8 2.69 0.46 8.0, 27.0 0.04
B6.A-Chr4 f 11.2 5.92   8 2.09 0.526 5.0, 23.0 -0.82
B6.A-Chr4 m 28.5 10.5   8 3.72 0.369 15.0, 45.0 1.95
B6.A-Chr5 f 23.9 6.71   8 2.37 0.281 14.0, 36.0 1.16
B6.A-Chr5 m 10.8 3.99   8 1.41 0.371 5.0, 15.0 -0.87
B6.A-Chr6 f 9.62 4.66   8 1.65 0.484 2.0, 16.0 -1.07
B6.A-Chr6 m 8.38 4.37   8 1.55 0.522 1.0, 16.0 -1.25
B6.A-Chr7 f 12.8 3.28   8 1.16 0.258 7.0, 18.0 -0.57
B6.A-Chr7 m 11.8 6.18   8 2.19 0.526 4.0, 21.0 -0.71
B6.A-Chr8 f 9.75 7.89   8 2.79 0.809 1.0, 22.0 -1.05
B6.A-Chr8 m 17.8 3.62   8 1.28 0.204 13.0, 24.0 0.25
B6.A-Chr9 f 14.9 5.0   8 1.77 0.336 11.0, 26.0 -0.24
B6.A-Chr9 m 13.6 8.31   8 2.94 0.61 3.0, 29.0 -0.42
B6.A-ChrX f 23.1 7.68   8 2.72 0.332 13.0, 38.0 1.04
B6.A-ChrX m 20.2 7.38   8 2.61 0.365 11.0, 32.0 0.63
B6.A-ChrY f 19.8 9.18   8 3.24 0.465 9.0, 39.0 0.52
B6.A-ChrY m 21.0 7.5   8 2.65 0.357 12.0, 33.0 0.76
C57BL/6J f 17.2 9.76   16 2.44 0.568 1.0, 34.0 0.11
C57BL/6J m 17.8 6.45   8 2.28 0.364 9.0, 29.0 0.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 23.8125 2.2735 28.2845 19.3405
A/J m 31.75 3.2152 38.0744 25.4256
B6.A-Chr1 f 14.875 3.2152 21.1994 8.5506
B6.A-Chr1 m 8.5 3.2152 14.8244 2.1756
B6.A-Chr10 f 11.75 3.2152 18.0744 5.4256
B6.A-Chr10 m 6.125 3.2152 12.4494 0.0
B6.A-Chr11 f 24.875 3.2152 31.1994 18.5506
B6.A-Chr11 m 15.6 2.8757 21.2567 9.9433
B6.A-Chr12 f 7.875 3.2152 14.1994 1.5506
B6.A-Chr12 m 10.625 3.2152 16.9494 4.3006
B6.A-Chr13 f 10.8 4.0669 18.7998 2.8002
B6.A-Chr13 m 14.8571 3.4372 21.6182 8.0961
B6.A-Chr14 f 11.25 3.2152 17.5744 4.9256
B6.A-Chr14 m 15.75 3.2152 22.0744 9.4256
B6.A-Chr15 f 9.0 3.2152 15.3244 2.6756
B6.A-Chr15 m 13.0 3.2152 19.3244 6.6756
B6.A-Chr16 f 32.5 3.2152 38.8244 26.1756
B6.A-Chr16 m 25.125 3.2152 31.4494 18.8006
B6.A-Chr17 f 15.875 3.2152 22.1994 9.5506
B6.A-Chr17 m 18.0 3.2152 24.3244 11.6756
B6.A-Chr18 f 16.375 3.2152 22.6994 10.0506
B6.A-Chr18 m 14.5 3.2152 20.8244 8.1756
B6.A-Chr19 f 15.625 3.2152 21.9494 9.3006
B6.A-Chr19 m 13.625 3.2152 19.9494 7.3006
B6.A-Chr2 f 17.875 3.2152 24.1994 11.5506
B6.A-Chr2 m 19.75 3.2152 26.0744 13.4256
B6.A-Chr3 f 23.875 3.2152 30.1994 17.5506
B6.A-Chr3 m 16.5 3.2152 22.8244 10.1756
B6.A-Chr4 f 11.25 3.2152 17.5744 4.9256
B6.A-Chr4 m 28.5 3.2152 34.8244 22.1756
B6.A-Chr5 f 23.875 3.2152 30.1994 17.5506
B6.A-Chr5 m 10.75 3.2152 17.0744 4.4256
B6.A-Chr6 f 9.625 3.2152 15.9494 3.3006
B6.A-Chr6 m 8.375 3.2152 14.6994 2.0506
B6.A-Chr7 f 12.75 3.2152 19.0744 6.4256
B6.A-Chr7 m 11.75 3.2152 18.0744 5.4256
B6.A-Chr8 f 9.75 3.2152 16.0744 3.4256
B6.A-Chr8 m 17.75 3.2152 24.0744 11.4256
B6.A-Chr9 f 14.875 3.2152 21.1994 8.5506
B6.A-Chr9 m 13.625 3.2152 19.9494 7.3006
B6.A-ChrX f 23.125 3.2152 29.4494 16.8006
B6.A-ChrX m 20.25 3.2152 26.5744 13.9256
B6.A-ChrY f 19.75 3.2152 26.0744 13.4256
B6.A-ChrY m 21.0 3.2152 27.3244 14.6756
C57BL/6J f 17.1875 2.2735 21.6595 12.7155
C57BL/6J m 17.75 3.2152 24.0744 11.4256


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 27.7813 1.9689 31.6541 23.9084
B6.A-Chr1 both 11.6875 2.2735 16.1595 7.2155
B6.A-Chr10 both 8.9375 2.2735 13.4095 4.4655
B6.A-Chr11 both 20.2375 2.1568 24.48 15.995
B6.A-Chr12 both 9.25 2.2735 13.722 4.778
B6.A-Chr13 both 12.8286 2.6624 18.0657 7.5915
B6.A-Chr14 both 13.5 2.2735 17.972 9.028
B6.A-Chr15 both 11.0 2.2735 15.472 6.528
B6.A-Chr16 both 28.8125 2.2735 33.2845 24.3405
B6.A-Chr17 both 16.9375 2.2735 21.4095 12.4655
B6.A-Chr18 both 15.4375 2.2735 19.9095 10.9655
B6.A-Chr19 both 14.625 2.2735 19.097 10.153
B6.A-Chr2 both 18.8125 2.2735 23.2845 14.3405
B6.A-Chr3 both 20.1875 2.2735 24.6595 15.7155
B6.A-Chr4 both 19.875 2.2735 24.347 15.403
B6.A-Chr5 both 17.3125 2.2735 21.7845 12.8405
B6.A-Chr6 both 9.0 2.2735 13.472 4.528
B6.A-Chr7 both 12.25 2.2735 16.722 7.778
B6.A-Chr8 both 13.75 2.2735 18.222 9.278
B6.A-Chr9 both 14.25 2.2735 18.722 9.778
B6.A-ChrX both 21.6875 2.2735 26.1595 17.2155
B6.A-ChrY both 20.375 2.2735 24.847 15.903
C57BL/6J both 17.4687 1.9689 21.3416 13.5959




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CKB, or AXBBXA