Project measure / variable:   Lake3   arena_entries

ID, description, units MPD:19006   arena_entries   number of arena entries in 5 min test   [n]  
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure hole board test
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  STRAIN COMPARISON PLOT
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Lake3 - number of arena entries in 5 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means9.00   n 9.32   n
Median of the strain means9.50   n 10.4   n
SD of the strain means± 3.41 ± 3.11
Coefficient of variation (CV)0.379 0.334
Min–max range of strain means0   –   14.5   n 0   –   13.0   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 35.7742 35.7742 1.988 0.1595
strain 22 3263.3744 148.3352 8.2432 < 0.0001
sex:strain 22 1019.5341 46.3425 2.5753 0.0002
Residuals 336 6046.2518 17.9948


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.0 0.0   16 0.0 0.0 -2.64
A/J m 0.0 0.0   8 0.0 0.0 -3.0
B6.A-Chr1 f 7.62 4.66   8 1.65 0.611 -0.41
B6.A-Chr1 m 5.38 4.31   8 1.52 0.801 1.0, 15.0 -1.27
B6.A-Chr10 f 9.62 4.98   8 1.76 0.518 0.18
B6.A-Chr10 m 4.62 3.7   8 1.31 0.8 -1.51
B6.A-Chr11 f 12.0 4.21   8 1.49 0.351 5.0, 19.0 0.88
B6.A-Chr11 m 8.8 3.08   10 0.975 0.35 4.0, 13.0 -0.17
B6.A-Chr12 f 9.38 3.89   8 1.37 0.415 1.0, 14.0 0.11
B6.A-Chr12 m 8.0 1.69   8 0.598 0.211 6.0, 11.0 -0.42
B6.A-Chr13 f 3.0 3.46   5 1.55 1.15 -1.76
B6.A-Chr13 m 11.6 3.74   7 1.41 0.323 7.0, 18.0 0.73
B6.A-Chr14 f 8.0 2.73   8 0.964 0.341 4.0, 11.0 -0.29
B6.A-Chr14 m 10.6 5.95   8 2.1 0.56 0.41
B6.A-Chr15 f 9.5 6.72   8 2.38 0.707 1.0, 22.0 0.15
B6.A-Chr15 m 9.5 3.46   8 1.22 0.365 6.0, 16.0 0.06
B6.A-Chr16 f 11.0 3.85   8 1.36 0.35 6.0, 17.0 0.59
B6.A-Chr16 m 11.6 4.69   8 1.66 0.403 4.0, 19.0 0.73
B6.A-Chr17 f 8.38 6.59   8 2.33 0.787 -0.18
B6.A-Chr17 m 12.1 5.74   8 2.03 0.474 7.0, 21.0 0.89
B6.A-Chr18 f 6.88 5.14   8 1.82 0.748 -0.62
B6.A-Chr18 m 7.12 2.64   8 0.934 0.371 4.0, 12.0 -0.71
B6.A-Chr19 f 9.5 3.74   8 1.32 0.394 4.0, 14.0 0.15
B6.A-Chr19 m 8.25 4.5   8 1.59 0.545 2.0, 14.0 -0.34
B6.A-Chr2 f 12.4 5.73   8 2.03 0.463 3.0, 20.0 1.0
B6.A-Chr2 m 13.0 6.3   8 2.23 0.485 1.18
B6.A-Chr3 f 13.2 2.82   8 0.996 0.213 9.0, 17.0 1.23
B6.A-Chr3 m 12.6 3.16   8 1.12 0.25 8.0, 17.0 1.05
B6.A-Chr4 f 6.12 3.4   8 1.2 0.555 2.0, 10.0 -0.85
B6.A-Chr4 m 11.4 3.34   8 1.18 0.293 7.0, 17.0 0.67
B6.A-Chr5 f 14.5 4.72   8 1.67 0.326 6.0, 21.0 1.61
B6.A-Chr5 m 7.38 4.1   8 1.45 0.556 2.0, 15.0 -0.62
B6.A-Chr6 f 4.5 3.07   8 1.09 0.682 -1.32
B6.A-Chr6 m 7.12 4.88   8 1.73 0.685 -0.71
B6.A-Chr7 f 12.5 4.44   8 1.57 0.355 7.0, 20.0 1.03
B6.A-Chr7 m 8.62 4.66   8 1.65 0.54 -0.23
B6.A-Chr8 f 9.62 6.3   8 2.23 0.655 1.0, 18.0 0.18
B6.A-Chr8 m 12.1 3.27   8 1.16 0.27 7.0, 17.0 0.89
B6.A-Chr9 f 11.1 3.6   8 1.27 0.324 5.0, 15.0 0.61
B6.A-Chr9 m 11.8 3.54   8 1.25 0.301 7.0, 18.0 0.8
B6.A-ChrX f 12.2 4.1   8 1.45 0.334 6.0, 18.0 0.94
B6.A-ChrX m 10.5 4.69   8 1.66 0.447 5.0, 20.0 0.38
B6.A-ChrY f 8.12 4.22   8 1.49 0.52 3.0, 15.0 -0.26
B6.A-ChrY m 10.4 4.17   8 1.48 0.402 2.0, 14.0 0.35
C57BL/6J f 7.94 3.55   16 0.887 0.447 1.0, 13.0 -0.31
C57BL/6J m 11.9 5.79   8 2.05 0.488 5.0, 19.0 0.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.0 1.0605 2.0861 -2.0861
A/J m 0.0 1.4998 2.9501 -2.9501
B6.A-Chr1 f 7.625 1.4998 10.5751 4.6749
B6.A-Chr1 m 5.375 1.4998 8.3251 2.4249
B6.A-Chr10 f 9.625 1.4998 12.5751 6.6749
B6.A-Chr10 m 4.625 1.4998 7.5751 1.6749
B6.A-Chr11 f 12.0 1.4998 14.9501 9.0499
B6.A-Chr11 m 8.8 1.3414 11.4387 6.1613
B6.A-Chr12 f 9.375 1.4998 12.3251 6.4249
B6.A-Chr12 m 8.0 1.4998 10.9501 5.0499
B6.A-Chr13 f 3.0 1.8971 6.7317 -0.7317
B6.A-Chr13 m 11.5714 1.6033 14.7253 8.4176
B6.A-Chr14 f 8.0 1.4998 10.9501 5.0499
B6.A-Chr14 m 10.625 1.4998 13.5751 7.6749
B6.A-Chr15 f 9.5 1.4998 12.4501 6.5499
B6.A-Chr15 m 9.5 1.4998 12.4501 6.5499
B6.A-Chr16 f 11.0 1.4998 13.9501 8.0499
B6.A-Chr16 m 11.625 1.4998 14.5751 8.6749
B6.A-Chr17 f 8.375 1.4998 11.3251 5.4249
B6.A-Chr17 m 12.125 1.4998 15.0751 9.1749
B6.A-Chr18 f 6.875 1.4998 9.8251 3.9249
B6.A-Chr18 m 7.125 1.4998 10.0751 4.1749
B6.A-Chr19 f 9.5 1.4998 12.4501 6.5499
B6.A-Chr19 m 8.25 1.4998 11.2001 5.2999
B6.A-Chr2 f 12.375 1.4998 15.3251 9.4249
B6.A-Chr2 m 13.0 1.4998 15.9501 10.0499
B6.A-Chr3 f 13.25 1.4998 16.2001 10.2999
B6.A-Chr3 m 12.625 1.4998 15.5751 9.6749
B6.A-Chr4 f 6.125 1.4998 9.0751 3.1749
B6.A-Chr4 m 11.375 1.4998 14.3251 8.4249
B6.A-Chr5 f 14.5 1.4998 17.4501 11.5499
B6.A-Chr5 m 7.375 1.4998 10.3251 4.4249
B6.A-Chr6 f 4.5 1.4998 7.4501 1.5499
B6.A-Chr6 m 7.125 1.4998 10.0751 4.1749
B6.A-Chr7 f 12.5 1.4998 15.4501 9.5499
B6.A-Chr7 m 8.625 1.4998 11.5751 5.6749
B6.A-Chr8 f 9.625 1.4998 12.5751 6.6749
B6.A-Chr8 m 12.125 1.4998 15.0751 9.1749
B6.A-Chr9 f 11.125 1.4998 14.0751 8.1749
B6.A-Chr9 m 11.75 1.4998 14.7001 8.7999
B6.A-ChrX f 12.25 1.4998 15.2001 9.2999
B6.A-ChrX m 10.5 1.4998 13.4501 7.5499
B6.A-ChrY f 8.125 1.4998 11.0751 5.1749
B6.A-ChrY m 10.375 1.4998 13.3251 7.4249
C57BL/6J f 7.9375 1.0605 10.0236 5.8514
C57BL/6J m 11.875 1.4998 14.8251 8.9249


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.0 0.9184 1.8066 -1.8066
B6.A-Chr1 both 6.5 1.0605 8.5861 4.4139
B6.A-Chr10 both 7.125 1.0605 9.2111 5.0389
B6.A-Chr11 both 10.4 1.0061 12.379 8.421
B6.A-Chr12 both 8.6875 1.0605 10.7736 6.6014
B6.A-Chr13 both 7.2857 1.2419 9.7287 4.8428
B6.A-Chr14 both 9.3125 1.0605 11.3986 7.2264
B6.A-Chr15 both 9.5 1.0605 11.5861 7.4139
B6.A-Chr16 both 11.3125 1.0605 13.3986 9.2264
B6.A-Chr17 both 10.25 1.0605 12.3361 8.1639
B6.A-Chr18 both 7.0 1.0605 9.0861 4.9139
B6.A-Chr19 both 8.875 1.0605 10.9611 6.7889
B6.A-Chr2 both 12.6875 1.0605 14.7736 10.6014
B6.A-Chr3 both 12.9375 1.0605 15.0236 10.8514
B6.A-Chr4 both 8.75 1.0605 10.8361 6.6639
B6.A-Chr5 both 10.9375 1.0605 13.0236 8.8514
B6.A-Chr6 both 5.8125 1.0605 7.8986 3.7264
B6.A-Chr7 both 10.5625 1.0605 12.6486 8.4764
B6.A-Chr8 both 10.875 1.0605 12.9611 8.7889
B6.A-Chr9 both 11.4375 1.0605 13.5236 9.3514
B6.A-ChrX both 11.375 1.0605 13.4611 9.2889
B6.A-ChrY both 9.25 1.0605 11.3361 7.1639
C57BL/6J both 9.9063 0.9184 11.7128 8.0997




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA