Phenotype measure:   Lake3   lat_perimeter

ID, description, units MPD:19005   lat_perimeter   latency to visit perimeter, 5 min test   [s]
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure hole board test
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake3 - latency to visit perimeter, 5 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means36.1   s 35.6   s
Median of the strain means26.8   s 24.2   s
SD of the strain means± 44.4 ± 44.0
Coefficient of variation (CV)1.23 1.23
Min–max range of strain means4.13   –   202   s 4.93   –   213   s
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3021.375 3021.375 0.9824 0.3223
strain 22 798315.7546 36287.0798 11.7985 < 0.0001
sex:strain 22 76374.5912 3471.5723 1.1288 0.3135
Residuals 336 1033389.9411 3075.5653


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 202.0 120.0   16 30.1 0.597 31.0, 300.0 3.74
A/J m 213.0 125.0   8 44.1 0.586 7.3, 300.0 4.03
B6.A-Chr1 f 27.5 23.9   8 8.46 0.87 5.54, 80.2 -0.19
B6.A-Chr1 m 37.9 45.7   8 16.2 1.21 3.0, 121.0 0.05
B6.A-Chr10 f 51.5 101.0   8 35.8 1.97 2.85, 300.0 0.35
B6.A-Chr10 m 99.9 109.0   8 38.4 1.09 3.0, 300.0 1.46
B6.A-Chr11 f 8.2 8.66   8 3.06 1.06 -0.63
B6.A-Chr11 m 26.9 32.3   10 10.2 1.2 1.0, 100.0 -0.2
B6.A-Chr12 f 35.3 43.8   8 15.5 1.24 2.59, 130.0 -0.02
B6.A-Chr12 m 14.1 12.9   8 4.56 0.915 1.84, 39.1 -0.49
B6.A-Chr13 f 125.0 126.0   5 56.1 1.01 1.84, 300.0 2.0
B6.A-Chr13 m 4.93 3.46   7 1.31 0.701 1.53, 11.2 -0.7
B6.A-Chr14 f 39.9 43.9   8 15.5 1.1 3.59, 137.0 0.09
B6.A-Chr14 m 49.6 102.0   8 36.0 2.05 1.1, 300.0 0.32
B6.A-Chr15 f 42.1 71.4   8 25.3 1.7 3.0, 213.0 0.14
B6.A-Chr15 m 35.1 28.9   8 10.2 0.824 14.0, 94.9 -0.01
B6.A-Chr16 f 16.8 44.6   8 15.8 2.65 0.08, 127.0 -0.44
B6.A-Chr16 m 15.1 16.4   8 5.79 1.08 0.1, 36.1 -0.47
B6.A-Chr17 f 16.1 24.4   8 8.64 1.52 2.34, 74.0 -0.45
B6.A-Chr17 m 30.3 41.2   8 14.6 1.36 1.0, 125.0 -0.12
B6.A-Chr18 f 31.0 52.9   8 18.7 1.71 -0.12
B6.A-Chr18 m 14.6 12.0   8 4.25 0.822 -0.48
B6.A-Chr19 f 49.2 49.0   8 17.3 0.997 3.85, 156.0 0.3
B6.A-Chr19 m 14.3 16.4   8 5.8 1.15 1.91, 52.9 -0.49
B6.A-Chr2 f 11.7 15.0   8 5.29 1.28 1.0, 44.2 -0.55
B6.A-Chr2 m 9.21 11.1   8 3.93 1.21 1.54, 33.5 -0.6
B6.A-Chr3 f 17.8 30.5   8 10.8 1.71 1.57, 92.8 -0.41
B6.A-Chr3 m 9.31 9.03   8 3.19 0.97 1.72, 25.8 -0.6
B6.A-Chr4 f 6.19 5.03   8 1.78 0.812 2.19, 17.2 -0.67
B6.A-Chr4 m 29.9 44.7   8 15.8 1.49 -0.13
B6.A-Chr5 f 4.13 3.36   8 1.19 0.813 1.06, 11.2 -0.72
B6.A-Chr5 m 26.5 37.4   8 13.2 1.41 1.59, 117.0 -0.21
B6.A-Chr6 f 45.7 59.7   8 21.1 1.31 3.01, 175.0 0.22
B6.A-Chr6 m 50.4 69.8   8 24.7 1.39 2.12, 199.0 0.34
B6.A-Chr7 f 8.62 6.99   8 2.47 0.812 0.72, 19.8 -0.62
B6.A-Chr7 m 52.7 101.0   8 35.6 1.91 6.76, 300.0 0.39
B6.A-Chr8 f 10.9 12.8   8 4.53 1.17 2.0, 40.0 -0.57
B6.A-Chr8 m 13.4 15.3   8 5.43 1.15 0.66, 47.9 -0.51
B6.A-Chr9 f 10.5 6.22   8 2.2 0.59 4.0, 20.6 -0.58
B6.A-Chr9 m 7.44 5.27   8 1.86 0.708 2.0, 16.6 -0.64
B6.A-ChrX f 10.1 9.91   8 3.5 0.985 -0.59
B6.A-ChrX m 18.4 11.9   8 4.21 0.648 1.0, 31.0 -0.39
B6.A-ChrY f 26.8 42.2   8 14.9 1.58 3.0, 129.0 -0.21
B6.A-ChrY m 22.6 32.9   8 11.6 1.45 1.22, 101.0 -0.3
C57BL/6J f 33.5 57.6   16 14.4 1.72 3.0, 180.0 -0.06
C57BL/6J m 24.2 36.4   8 12.9 1.5 4.8, 109.0 -0.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 201.5688 13.8644 228.8408 174.2967
A/J m 213.1 19.6073 251.6685 174.5315
B6.A-Chr1 f 27.5162 19.6073 66.0847 0.0
B6.A-Chr1 m 37.875 19.6073 76.4435 0.0
B6.A-Chr10 f 51.5075 19.6073 90.076 12.939
B6.A-Chr10 m 99.875 19.6073 138.4435 61.3065
B6.A-Chr11 f 8.1975 19.6073 46.766 0.0
B6.A-Chr11 m 26.909 17.5373 61.4057 0.0
B6.A-Chr12 f 35.33 19.6073 73.8985 0.0
B6.A-Chr12 m 14.105 19.6073 52.6735 0.0
B6.A-Chr13 f 124.888 24.8015 173.6737 76.1023
B6.A-Chr13 m 4.93 20.9611 46.1615 0.0
B6.A-Chr14 f 39.8738 19.6073 78.4422 1.3053
B6.A-Chr14 m 49.5988 19.6073 88.1672 11.0303
B6.A-Chr15 f 42.1225 19.6073 80.691 3.554
B6.A-Chr15 m 35.075 19.6073 73.6435 0.0
B6.A-Chr16 f 16.8188 19.6073 55.3872 0.0
B6.A-Chr16 m 15.1163 19.6073 53.6847 0.0
B6.A-Chr17 f 16.0562 19.6073 54.6247 0.0
B6.A-Chr17 m 30.3425 19.6073 68.911 0.0
B6.A-Chr18 f 31.0 19.6073 69.5685 0.0
B6.A-Chr18 m 14.625 19.6073 53.1935 0.0
B6.A-Chr19 f 49.1937 19.6073 87.7622 10.6253
B6.A-Chr19 m 14.2763 19.6073 52.8447 0.0
B6.A-Chr2 f 11.7025 19.6073 50.271 0.0
B6.A-Chr2 m 9.21 19.6073 47.7785 0.0
B6.A-Chr3 f 17.7887 19.6073 56.3572 0.0
B6.A-Chr3 m 9.3125 19.6073 47.881 0.0
B6.A-Chr4 f 6.1912 19.6073 44.7597 0.0
B6.A-Chr4 m 29.8787 19.6073 68.4472 0.0
B6.A-Chr5 f 4.1338 19.6073 42.7022 0.0
B6.A-Chr5 m 26.5413 19.6073 65.1097 0.0
B6.A-Chr6 f 45.7162 19.6073 84.2847 7.1478
B6.A-Chr6 m 50.4025 19.6073 88.971 11.834
B6.A-Chr7 f 8.615 19.6073 47.1835 0.0
B6.A-Chr7 m 52.7413 19.6073 91.3097 14.1728
B6.A-Chr8 f 10.9375 19.6073 49.506 0.0
B6.A-Chr8 m 13.3812 19.6073 51.9497 0.0
B6.A-Chr9 f 10.5337 19.6073 49.1022 0.0
B6.A-Chr9 m 7.4438 19.6073 46.0122 0.0
B6.A-ChrX f 10.0588 19.6073 48.6272 0.0
B6.A-ChrX m 18.3538 19.6073 56.9222 0.0
B6.A-ChrY f 26.75 19.6073 65.3185 0.0
B6.A-ChrY m 22.6488 19.6073 61.2172 0.0
C57BL/6J f 33.5075 13.8644 60.7795 6.2355
C57BL/6J m 24.2375 19.6073 62.806 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 207.3344 12.007 230.9527 183.7161
B6.A-Chr1 both 32.6956 13.8644 59.9677 5.4236
B6.A-Chr10 both 75.6913 13.8644 102.9633 48.4192
B6.A-Chr11 both 17.5532 13.153 43.4258 0.0
B6.A-Chr12 both 24.7175 13.8644 51.9895 0.0
B6.A-Chr13 both 64.909 16.2364 96.8468 32.9712
B6.A-Chr14 both 44.7363 13.8644 72.0083 17.4642
B6.A-Chr15 both 38.5988 13.8644 65.8708 11.3267
B6.A-Chr16 both 15.9675 13.8644 43.2395 0.0
B6.A-Chr17 both 23.1994 13.8644 50.4714 0.0
B6.A-Chr18 both 22.8125 13.8644 50.0845 0.0
B6.A-Chr19 both 31.735 13.8644 59.007 4.463
B6.A-Chr2 both 10.4563 13.8644 37.7283 0.0
B6.A-Chr3 both 13.5506 13.8644 40.8227 0.0
B6.A-Chr4 both 18.035 13.8644 45.307 0.0
B6.A-Chr5 both 15.3375 13.8644 42.6095 0.0
B6.A-Chr6 both 48.0594 13.8644 75.3314 20.7873
B6.A-Chr7 both 30.6781 13.8644 57.9502 3.4061
B6.A-Chr8 both 12.1594 13.8644 39.4314 0.0
B6.A-Chr9 both 8.9887 13.8644 36.2608 0.0
B6.A-ChrX both 14.2063 13.8644 41.4783 0.0
B6.A-ChrY both 24.6994 13.8644 51.9714 0.0
C57BL/6J both 28.8725 12.007 52.4908 5.2542




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA