Phenotype measure:   Lake3   urination

ID, description, units MPD:19004   urination   number of urine puddles in 5 min test   [n]
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure hole board test
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake3 - number of urine puddles in 5 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.103   n 0.152   n
Median of the strain means0   n 0.125   n
SD of the strain means± 0.134 ± 0.155
Coefficient of variation (CV)1.30 1.02
Min–max range of strain means0   –   0.500   n 0   –   0.500   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2876 0.2876 2.1297 0.1454
strain 22 4.6573 0.2117 1.5676 0.0516
sex:strain 22 2.8974 0.1317 0.9752 0.4955
Residuals 336 45.375 0.135


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.0 0.0   16 0.0 0.0 -0.77
A/J m 0.25 0.463   8 0.164 1.85 0.63
B6.A-Chr1 f 0.25 0.463   8 0.164 1.85 1.09
B6.A-Chr1 m 0.375 0.518   8 0.183 1.38 1.44
B6.A-Chr10 f 0.5 0.756   8 0.267 1.51 2.96
B6.A-Chr10 m 0.125 0.354   8 0.125 2.83 -0.18
B6.A-Chr11 f 0.0 0.0   8 0.0 0.0 -0.77
B6.A-Chr11 m 0.0 0.0   10 0.0 0.0 -0.98
B6.A-Chr12 f 0.25 0.463   8 0.164 1.85 1.09
B6.A-Chr12 m 0.25 0.463   8 0.164 1.85 0.63
B6.A-Chr13 f 0.0 0.0   5 0.0 0.0 -0.77
B6.A-Chr13 m 0.0 0.0   7 0.0 0.0 -0.98
B6.A-Chr14 f 0.0 0.0   8 0.0 0.0 -0.77
B6.A-Chr14 m 0.0 0.0   8 0.0 0.0 -0.98
B6.A-Chr15 f 0.125 0.354   8 0.125 2.83 0.16
B6.A-Chr15 m 0.0 0.0   8 0.0 0.0 -0.98
B6.A-Chr16 f 0.0 0.0   8 0.0 0.0 -0.77
B6.A-Chr16 m 0.375 1.06   8 0.375 2.83 1.44
B6.A-Chr17 f 0.125 0.354   8 0.125 2.83 0.16
B6.A-Chr17 m 0.5 0.535   8 0.189 1.07 2.24
B6.A-Chr18 f 0.25 0.463   8 0.164 1.85 1.09
B6.A-Chr18 m 0.125 0.354   8 0.125 2.83 -0.18
B6.A-Chr19 f 0.0 0.0   8 0.0 0.0 -0.77
B6.A-Chr19 m 0.0 0.0   8 0.0 0.0 -0.98
B6.A-Chr2 f 0.25 0.463   8 0.164 1.85 1.09
B6.A-Chr2 m 0.125 0.354   8 0.125 2.83 -0.18
B6.A-Chr3 f 0.0 0.0   8 0.0 0.0 -0.77
B6.A-Chr3 m 0.0 0.0   8 0.0 0.0 -0.98
B6.A-Chr4 f 0.125 0.354   8 0.125 2.83 0.16
B6.A-Chr4 m 0.375 0.744   8 0.263 1.98 1.44
B6.A-Chr5 f 0.0 0.0   8 0.0 0.0 -0.77
B6.A-Chr5 m 0.125 0.354   8 0.125 2.83 -0.18
B6.A-Chr6 f 0.25 0.707   8 0.25 2.83 1.09
B6.A-Chr6 m 0.25 0.463   8 0.164 1.85 0.63
B6.A-Chr7 f 0.125 0.354   8 0.125 2.83 0.16
B6.A-Chr7 m 0.125 0.354   8 0.125 2.83 -0.18
B6.A-Chr8 f 0.0 0.0   8 0.0 0.0 -0.77
B6.A-Chr8 m 0.25 0.463   8 0.164 1.85 0.63
B6.A-Chr9 f 0.0 0.0   8 0.0 0.0 -0.77
B6.A-Chr9 m 0.25 0.463   8 0.164 1.85 0.63
B6.A-ChrX f 0.0 0.0   8 0.0 0.0 -0.77
B6.A-ChrX m 0.0 0.0   8 0.0 0.0 -0.98
B6.A-ChrY f 0.125 0.354   8 0.125 2.83 0.16
B6.A-ChrY m 0.0 0.0   8 0.0 0.0 -0.98
C57BL/6J f 0.0 0.0   16 0.0 0.0 -0.77
C57BL/6J m 0.0 0.0   8 0.0 0.0 -0.98


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.0 0.0919 0.1807 -0.1807
A/J m 0.25 0.1299 0.5056 -0.0056
B6.A-Chr1 f 0.25 0.1299 0.5056 -0.0056
B6.A-Chr1 m 0.375 0.1299 0.6306 0.1194
B6.A-Chr10 f 0.5 0.1299 0.7556 0.2444
B6.A-Chr10 m 0.125 0.1299 0.3806 -0.1306
B6.A-Chr11 f 0.0 0.1299 0.2556 -0.2556
B6.A-Chr11 m 0.0 0.1162 0.2286 -0.2286
B6.A-Chr12 f 0.25 0.1299 0.5056 -0.0056
B6.A-Chr12 m 0.25 0.1299 0.5056 -0.0056
B6.A-Chr13 f 0.0 0.1643 0.3233 -0.3233
B6.A-Chr13 m 0.0 0.1389 0.2732 -0.2732
B6.A-Chr14 f 0.0 0.1299 0.2556 -0.2556
B6.A-Chr14 m 0.0 0.1299 0.2556 -0.2556
B6.A-Chr15 f 0.125 0.1299 0.3806 -0.1306
B6.A-Chr15 m 0.0 0.1299 0.2556 -0.2556
B6.A-Chr16 f 0.0 0.1299 0.2556 -0.2556
B6.A-Chr16 m 0.375 0.1299 0.6306 0.1194
B6.A-Chr17 f 0.125 0.1299 0.3806 -0.1306
B6.A-Chr17 m 0.5 0.1299 0.7556 0.2444
B6.A-Chr18 f 0.25 0.1299 0.5056 -0.0056
B6.A-Chr18 m 0.125 0.1299 0.3806 -0.1306
B6.A-Chr19 f 0.0 0.1299 0.2556 -0.2556
B6.A-Chr19 m 0.0 0.1299 0.2556 -0.2556
B6.A-Chr2 f 0.25 0.1299 0.5056 -0.0056
B6.A-Chr2 m 0.125 0.1299 0.3806 -0.1306
B6.A-Chr3 f 0.0 0.1299 0.2556 -0.2556
B6.A-Chr3 m 0.0 0.1299 0.2556 -0.2556
B6.A-Chr4 f 0.125 0.1299 0.3806 -0.1306
B6.A-Chr4 m 0.375 0.1299 0.6306 0.1194
B6.A-Chr5 f 0.0 0.1299 0.2556 -0.2556
B6.A-Chr5 m 0.125 0.1299 0.3806 -0.1306
B6.A-Chr6 f 0.25 0.1299 0.5056 -0.0056
B6.A-Chr6 m 0.25 0.1299 0.5056 -0.0056
B6.A-Chr7 f 0.125 0.1299 0.3806 -0.1306
B6.A-Chr7 m 0.125 0.1299 0.3806 -0.1306
B6.A-Chr8 f 0.0 0.1299 0.2556 -0.2556
B6.A-Chr8 m 0.25 0.1299 0.5056 -0.0056
B6.A-Chr9 f 0.0 0.1299 0.2556 -0.2556
B6.A-Chr9 m 0.25 0.1299 0.5056 -0.0056
B6.A-ChrX f 0.0 0.1299 0.2556 -0.2556
B6.A-ChrX m 0.0 0.1299 0.2556 -0.2556
B6.A-ChrY f 0.125 0.1299 0.3806 -0.1306
B6.A-ChrY m 0.0 0.1299 0.2556 -0.2556
C57BL/6J f 0.0 0.0919 0.1807 -0.1807
C57BL/6J m 0.0 0.1299 0.2556 -0.2556


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.125 0.0796 0.2815 -0.0315
B6.A-Chr1 both 0.3125 0.0919 0.4932 0.1318
B6.A-Chr10 both 0.3125 0.0919 0.4932 0.1318
B6.A-Chr11 both 0.0 0.0872 0.1714 -0.1714
B6.A-Chr12 both 0.25 0.0919 0.4307 0.0693
B6.A-Chr13 both 0.0 0.1076 0.2116 -0.2116
B6.A-Chr14 both 0.0 0.0919 0.1807 -0.1807
B6.A-Chr15 both 0.0625 0.0919 0.2432 -0.1182
B6.A-Chr16 both 0.1875 0.0919 0.3682 0.0068
B6.A-Chr17 both 0.3125 0.0919 0.4932 0.1318
B6.A-Chr18 both 0.1875 0.0919 0.3682 0.0068
B6.A-Chr19 both 0.0 0.0919 0.1807 -0.1807
B6.A-Chr2 both 0.1875 0.0919 0.3682 0.0068
B6.A-Chr3 both 0.0 0.0919 0.1807 -0.1807
B6.A-Chr4 both 0.25 0.0919 0.4307 0.0693
B6.A-Chr5 both 0.0625 0.0919 0.2432 -0.1182
B6.A-Chr6 both 0.25 0.0919 0.4307 0.0693
B6.A-Chr7 both 0.125 0.0919 0.3057 -0.0557
B6.A-Chr8 both 0.125 0.0919 0.3057 -0.0557
B6.A-Chr9 both 0.125 0.0919 0.3057 -0.0557
B6.A-ChrX both 0.0 0.0919 0.1807 -0.1807
B6.A-ChrY both 0.0625 0.0919 0.2432 -0.1182
C57BL/6J both 0.0 0.0796 0.1565 -0.1565




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA