Phenotype measure:   Lake3   grooming

ID, description, units MPD:19002   grooming   number of grooming episodes in 5 min test   [n]
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure hole board test
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake3 - number of grooming episodes in 5 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means2.02   n 2.25   n
Median of the strain means1.88   n 2.12   n
SD of the strain means± 0.754 ± 0.776
Coefficient of variation (CV)0.373 0.345
Min–max range of strain means0.625   –   3.62   n 1.12   –   4.12   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6.8844 6.8844 2.4861 0.1158
strain 22 185.3132 8.4233 3.0419 < 0.0001
sex:strain 22 29.1818 1.3264 0.479 0.979
Residuals 336 930.4321 2.7691


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 1.06 0.854   16 0.213 0.804 -1.28
A/J m 1.12 1.55   8 0.549 1.38 -1.45
B6.A-Chr1 f 2.5 1.77   8 0.627 0.709 1.0, 6.0 0.63
B6.A-Chr1 m 3.12 2.17   8 0.766 0.693 1.0, 7.0 1.13
B6.A-Chr10 f 2.12 1.36   8 0.479 0.638 1.0, 5.0 0.13
B6.A-Chr10 m 2.12 0.835   8 0.295 0.393 1.0, 3.0 -0.16
B6.A-Chr11 f 1.75 1.04   8 0.366 0.591 1.0, 4.0 -0.36
B6.A-Chr11 m 1.6 1.58   10 0.499 0.986 -0.83
B6.A-Chr12 f 2.38 1.19   8 0.42 0.5 1.0, 5.0 0.47
B6.A-Chr12 m 3.38 1.77   8 0.625 0.524 1.0, 7.0 1.46
B6.A-Chr13 f 1.8 0.837   5 0.374 0.465 1.0, 3.0 -0.3
B6.A-Chr13 m 1.86 1.35   7 0.508 0.724 -0.5
B6.A-Chr14 f 2.25 0.886   8 0.313 0.394 1.0, 4.0 0.3
B6.A-Chr14 m 1.25 1.16   8 0.412 0.932 -1.28
B6.A-Chr15 f 3.12 3.44   8 1.22 1.1 1.45
B6.A-Chr15 m 4.12 3.44   8 1.22 0.834 2.41
B6.A-Chr16 f 0.625 0.744   8 0.263 1.19 -1.85
B6.A-Chr16 m 2.25 1.16   8 0.412 0.518 0.0
B6.A-Chr17 f 1.75 0.886   8 0.313 0.507 1.0, 3.0 -0.36
B6.A-Chr17 m 2.0 1.31   8 0.463 0.655 -0.32
B6.A-Chr18 f 2.12 1.81   8 0.639 0.851 0.13
B6.A-Chr18 m 2.25 1.98   8 0.701 0.881 0.0
B6.A-Chr19 f 2.62 1.19   8 0.42 0.452 1.0, 5.0 0.79
B6.A-Chr19 m 2.38 1.06   8 0.375 0.447 1.0, 4.0 0.17
B6.A-Chr2 f 3.12 2.23   8 0.789 0.714 1.45
B6.A-Chr2 m 2.62 2.13   8 0.754 0.813 0.48
B6.A-Chr3 f 1.88 1.36   8 0.479 0.723 -0.19
B6.A-Chr3 m 1.88 0.991   8 0.35 0.529 1.0, 4.0 -0.47
B6.A-Chr4 f 1.62 0.916   8 0.324 0.564 1.0, 3.0 -0.53
B6.A-Chr4 m 1.75 1.91   8 0.675 1.09 -0.64
B6.A-Chr5 f 2.88 1.46   8 0.515 0.507 1.0, 5.0 1.14
B6.A-Chr5 m 2.62 1.19   8 0.42 0.452 1.0, 4.0 0.48
B6.A-Chr6 f 2.25 2.43   8 0.861 1.08 0.3
B6.A-Chr6 m 3.25 1.83   8 0.648 0.564 1.0, 6.0 1.29
B6.A-Chr7 f 0.75 1.39   8 0.491 1.85 -1.69
B6.A-Chr7 m 1.25 0.886   8 0.313 0.709 -1.28
B6.A-Chr8 f 3.62 3.38   8 1.19 0.932 2.12
B6.A-Chr8 m 3.38 3.25   8 1.15 0.963 1.46
B6.A-Chr9 f 1.62 1.3   8 0.46 0.802 -0.53
B6.A-Chr9 m 2.12 0.991   8 0.35 0.466 1.0, 4.0 -0.16
B6.A-ChrX f 1.88 1.64   8 0.581 0.876 -0.19
B6.A-ChrX m 2.12 1.25   8 0.441 0.587 -0.16
B6.A-ChrY f 1.12 1.13   8 0.398 1.0 -1.2
B6.A-ChrY m 1.62 1.19   8 0.42 0.731 -0.81
C57BL/6J f 1.69 1.25   16 0.312 0.741 -0.44
C57BL/6J m 1.62 0.744   8 0.263 0.458 -0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 1.0625 0.416 1.8808 0.2442
A/J m 1.125 0.5883 2.2823 0.0
B6.A-Chr1 f 2.5 0.5883 3.6573 1.3427
B6.A-Chr1 m 3.125 0.5883 4.2823 1.9677
B6.A-Chr10 f 2.125 0.5883 3.2823 0.9677
B6.A-Chr10 m 2.125 0.5883 3.2823 0.9677
B6.A-Chr11 f 1.75 0.5883 2.9073 0.5927
B6.A-Chr11 m 1.6 0.5262 2.6351 0.5649
B6.A-Chr12 f 2.375 0.5883 3.5323 1.2177
B6.A-Chr12 m 3.375 0.5883 4.5323 2.2177
B6.A-Chr13 f 1.8 0.7442 3.2639 0.3361
B6.A-Chr13 m 1.8571 0.629 3.0943 0.6199
B6.A-Chr14 f 2.25 0.5883 3.4073 1.0927
B6.A-Chr14 m 1.25 0.5883 2.4073 0.0927
B6.A-Chr15 f 3.125 0.5883 4.2823 1.9677
B6.A-Chr15 m 4.125 0.5883 5.2823 2.9677
B6.A-Chr16 f 0.625 0.5883 1.7823 0.0
B6.A-Chr16 m 2.25 0.5883 3.4073 1.0927
B6.A-Chr17 f 1.75 0.5883 2.9073 0.5927
B6.A-Chr17 m 2.0 0.5883 3.1573 0.8427
B6.A-Chr18 f 2.125 0.5883 3.2823 0.9677
B6.A-Chr18 m 2.25 0.5883 3.4073 1.0927
B6.A-Chr19 f 2.625 0.5883 3.7823 1.4677
B6.A-Chr19 m 2.375 0.5883 3.5323 1.2177
B6.A-Chr2 f 3.125 0.5883 4.2823 1.9677
B6.A-Chr2 m 2.625 0.5883 3.7823 1.4677
B6.A-Chr3 f 1.875 0.5883 3.0323 0.7177
B6.A-Chr3 m 1.875 0.5883 3.0323 0.7177
B6.A-Chr4 f 1.625 0.5883 2.7823 0.4677
B6.A-Chr4 m 1.75 0.5883 2.9073 0.5927
B6.A-Chr5 f 2.875 0.5883 4.0323 1.7177
B6.A-Chr5 m 2.625 0.5883 3.7823 1.4677
B6.A-Chr6 f 2.25 0.5883 3.4073 1.0927
B6.A-Chr6 m 3.25 0.5883 4.4073 2.0927
B6.A-Chr7 f 0.75 0.5883 1.9073 0.0
B6.A-Chr7 m 1.25 0.5883 2.4073 0.0927
B6.A-Chr8 f 3.625 0.5883 4.7823 2.4677
B6.A-Chr8 m 3.375 0.5883 4.5323 2.2177
B6.A-Chr9 f 1.625 0.5883 2.7823 0.4677
B6.A-Chr9 m 2.125 0.5883 3.2823 0.9677
B6.A-ChrX f 1.875 0.5883 3.0323 0.7177
B6.A-ChrX m 2.125 0.5883 3.2823 0.9677
B6.A-ChrY f 1.125 0.5883 2.2823 0.0
B6.A-ChrY m 1.625 0.5883 2.7823 0.4677
C57BL/6J f 1.6875 0.416 2.5058 0.8692
C57BL/6J m 1.625 0.5883 2.7823 0.4677


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 1.0937 0.3603 1.8024 0.3851
B6.A-Chr1 both 2.8125 0.416 3.6308 1.9942
B6.A-Chr10 both 2.125 0.416 2.9433 1.3067
B6.A-Chr11 both 1.675 0.3947 2.4513 0.8987
B6.A-Chr12 both 2.875 0.416 3.6933 2.0567
B6.A-Chr13 both 1.8286 0.4872 2.7869 0.8702
B6.A-Chr14 both 1.75 0.416 2.5683 0.9317
B6.A-Chr15 both 3.625 0.416 4.4433 2.8067
B6.A-Chr16 both 1.4375 0.416 2.2558 0.6192
B6.A-Chr17 both 1.875 0.416 2.6933 1.0567
B6.A-Chr18 both 2.1875 0.416 3.0058 1.3692
B6.A-Chr19 both 2.5 0.416 3.3183 1.6817
B6.A-Chr2 both 2.875 0.416 3.6933 2.0567
B6.A-Chr3 both 1.875 0.416 2.6933 1.0567
B6.A-Chr4 both 1.6875 0.416 2.5058 0.8692
B6.A-Chr5 both 2.75 0.416 3.5683 1.9317
B6.A-Chr6 both 2.75 0.416 3.5683 1.9317
B6.A-Chr7 both 1.0 0.416 1.8183 0.1817
B6.A-Chr8 both 3.5 0.416 4.3183 2.6817
B6.A-Chr9 both 1.875 0.416 2.6933 1.0567
B6.A-ChrX both 2.0 0.416 2.8183 1.1817
B6.A-ChrY both 1.375 0.416 2.1933 0.5567
C57BL/6J both 1.6562 0.3603 2.3649 0.9476




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CKB, or AXBBXA