Phenotype measure:   Cheverud1   perirenal_pctfat_hifat

ID, description, units MPD:17880   perirenal_pctfat_hifat   perirenal fat pad weight as percentage of body weight   [%]  high-fat diet   measure
high-fat diet study
Data set, strains Cheverud1   LGXSM w/par   17 strains     sex: both     age: 20-30wks
Procedure fat pad weights
Ontology mappings

  STRAIN COMPARISON PLOT
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Cheverud1 - perirenal fat pad weight as percentage of body weight high-fat diet



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested16 strains17 strains
Mean of the strain means4.00   % 3.07   %
Median of the strain means3.63   % 2.93   %
SD of the strain means± 1.23 ± 0.974
Coefficient of variation (CV)0.308 0.317
Min–max range of strain means2.16   –   7.20   % 1.59   –   5.54   %
Mean sample size per strain7.9   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 48.1428 48.1428 29.8016 < 0.0001
strain 15 212.1217 14.1414 8.7539 < 0.0001
sex:strain 15 41.9241 2.7949 1.7301 0.0466
Residuals 223 360.2433 1.6154


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
LGXSM10 f 4.33 0.885   9 0.295 0.205 2.82, 5.48 0.27
LGXSM10 m 2.69 0.953   10 0.301 0.354 1.21, 4.45 -0.39
LGXSM15 f 3.49 1.67   9 0.558 0.48 1.29, 6.22 -0.41
LGXSM15 m 2.65 1.31   11 0.394 0.494 1.09, 4.61 -0.43
LGXSM18 f 3.62 1.55   8 0.549 0.429 2.33, 7.23 -0.31
LGXSM18 m 2.94 0.652   8 0.231 0.222 1.96, 3.83 -0.14
LGXSM19 f 4.72 2.03   9 0.677 0.43 1.8, 8.3 0.59
LGXSM19 m 3.17 0.713   8 0.252 0.225 2.24, 4.36 0.1
LGXSM20 f 3.62 0.825   8 0.292 0.228 2.45, 4.56 -0.31
LGXSM20 m 2.29 1.7   6 0.693 0.741 0.58, 4.8 -0.8
LGXSM22 f 5.19 0.47   13 0.13 0.0906 4.36, 5.95 0.97
LGXSM22 m 3.59 0.94   12 0.271 0.262 2.32, 5.77 0.53
LGXSM23 f 3.65 2.17   8 0.766 0.594 0.91, 6.3 -0.28
LGXSM23 m 2.67 0.706   8 0.25 0.264 1.69, 3.99 -0.41
LGXSM31 f 7.2 1.68   5 0.752 0.233 5.54, 9.1 2.6
LGXSM31 m 4.43 1.05   5 0.47 0.237 3.41, 6.08 1.39
LGXSM33 f 4.24 1.01   7 0.38 0.237 2.3, 5.13 0.2
LGXSM33 m 2.93 0.597   7 0.226 0.204 2.03, 3.95 -0.15
LGXSM35 f 3.01 1.4   7 0.53 0.466 1.66, 5.79 -0.8
LGXSM35 m 4.2 1.81   8 0.64 0.431 2.31, 7.3 1.16
LGXSM39 f 2.37 1.49   8 0.528 0.63 0.79, 4.99 -1.32
LGXSM39 m 1.59 1.48   9 0.493 0.929 0.04, 4.3 -1.52
LGXSM4 f 3.11 0.757   8 0.268 0.243 2.29, 4.79 -0.72
LGXSM4 m 2.93 0.503   6 0.205 0.172 2.17, 3.66 -0.15
LGXSM45 f 2.16 0.978   5 0.438 0.454 0.93, 3.58 -1.49
LGXSM45 m 1.87 0.293   3 0.169 0.156 1.54, 2.09 -1.23
LGXSM46 f 4.47 0.999   9 0.333 0.224 3.04, 6.05 0.38
LGXSM46 m 3.61 0.806   10 0.255 0.224 2.38, 4.63 0.55
LGXSM48 f 5.23 2.56   7 0.968 0.49 2.2, 8.57 1.0
LGXSM48 m 5.54 1.54   8 0.544 0.278 3.84, 7.3 2.53
LGXSM5 f 3.53 0.814   8 0.288 0.23 2.06, 4.92 -0.38
LGXSM5 m 2.78 0.964   8 0.341 0.347 1.76, 4.64 -0.3
SM/J m 2.34 0.797   6 0.326 0.341 1.05, 3.49 -0.75


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
LGXSM10 f 4.3289 0.4237 5.1638 3.494
LGXSM10 m 2.691 0.4019 3.4831 1.8989
LGXSM15 f 3.4911 0.4237 4.326 2.6562
LGXSM15 m 2.6455 0.3832 3.4007 1.8903
LGXSM18 f 3.6175 0.4494 4.503 2.732
LGXSM18 m 2.9425 0.4494 3.828 2.057
LGXSM19 f 4.7211 0.4237 5.556 3.8862
LGXSM19 m 3.1738 0.4494 4.0593 2.2882
LGXSM20 f 3.6213 0.4494 4.5068 2.7357
LGXSM20 m 2.29 0.5189 3.3125 1.2675
LGXSM22 f 5.1862 0.3525 5.8808 4.4915
LGXSM22 m 3.5875 0.3669 4.3105 2.8645
LGXSM23 f 3.65 0.4494 4.5355 2.7645
LGXSM23 m 2.6725 0.4494 3.558 1.787
LGXSM31 f 7.2 0.5684 8.3201 6.0799
LGXSM31 m 4.432 0.5684 5.5521 3.3119
LGXSM33 f 4.2386 0.4804 5.1853 3.2919
LGXSM33 m 2.93 0.4804 3.8767 1.9833
LGXSM35 f 3.01 0.4804 3.9567 2.0633
LGXSM35 m 4.1975 0.4494 5.083 3.312
LGXSM39 f 2.3712 0.4494 3.2568 1.4857
LGXSM39 m 1.5933 0.4237 2.4282 0.7584
LGXSM4 f 3.1113 0.4494 3.9968 2.2257
LGXSM4 m 2.925 0.5189 3.9475 1.9025
LGXSM45 f 2.156 0.5684 3.2761 1.0359
LGXSM45 m 1.8733 0.7338 3.3194 0.4272
LGXSM46 f 4.4678 0.4237 5.3027 3.6329
LGXSM46 m 3.605 0.4019 4.3971 2.8129
LGXSM48 f 5.2343 0.4804 6.181 4.2876
LGXSM48 m 5.5425 0.4494 6.428 4.657
LGXSM5 f 3.5313 0.4494 4.4168 2.6457
LGXSM5 m 2.78 0.4494 3.6655 1.8945


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
LGXSM10 both 3.5099 0.292 4.0854 2.9345
LGXSM15 both 3.0683 0.2856 3.6312 2.5054
LGXSM18 both 3.28 0.3177 3.9062 2.6538
LGXSM19 both 3.9474 0.3088 4.556 3.3389
LGXSM20 both 2.9556 0.3432 3.632 2.2793
LGXSM22 both 4.3868 0.2544 4.8882 3.8855
LGXSM23 both 3.1613 0.3177 3.7874 2.5351
LGXSM31 both 5.816 0.4019 6.6081 5.0239
LGXSM33 both 3.5843 0.3397 4.2537 2.9149
LGXSM35 both 3.6038 0.3289 4.2519 2.9556
LGXSM39 both 1.9823 0.3088 2.5908 1.3738
LGXSM4 both 3.0181 0.3432 3.6945 2.3418
LGXSM45 both 2.0147 0.4641 2.9293 1.1001
LGXSM46 both 4.0364 0.292 4.6118 3.461
LGXSM48 both 5.3884 0.3289 6.0365 4.7402
LGXSM5 both 3.1556 0.3177 3.7818 2.5294




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA