Project measure / variable:   Wahlsten2   wmaze

ID, description, units MPD:16010   wmaze   wildness rating, mean during water escape   [score]  
Data set, strains Wahlsten2   inbred   21 strains     sex: both     age: 10-12wks
Procedure behavior observation
Ontology mappings

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  STRAIN COMPARISON PLOT
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Wahlsten2 - wildness rating, mean during water escape



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains20 strains
Mean of the strain means0.670   score 0.481   score
Median of the strain means0.325   score 0.203   score
SD of the strain means± 0.737 ± 0.506
Coefficient of variation (CV)1.10 1.05
Min–max range of strain means0   –   2.17   score 0   –   1.45   score
Mean sample size per strain9.3   mice 9.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.0874 2.0874 2.9327 0.0877
strain 19 134.5308 7.0806 9.9479 < 0.0001
sex:strain 19 7.7175 0.4062 0.5707 0.9258
Residuals 331 235.5932 0.7118


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.12 0.215   10 0.068 1.79 -0.75
129S1/SvImJ m 0.156 0.24   9 0.0801 1.55 -0.64
A/J f 0.0286 0.0756   7 0.0286 2.65 -0.87
A/J m 0.0 0.0   10 0.0 0.0 -0.95
AKR/J f 1.16 0.573   9 0.191 0.495 0.8, 2.6 0.67
AKR/J m 0.9 0.214   8 0.0756 0.238 0.4, 1.0 0.83
BALB/cByJ f 0.08 0.14   10 0.0442 1.75 -0.8
BALB/cByJ m 0.06 0.19   10 0.06 3.16 -0.83
BTBR T+ Itpr3tf/J f 0.317 0.711   12 0.205 2.24 -0.48
BTBR T+ Itpr3tf/J m 0.0 0.0   6 0.0 0.0 -0.95
C3H/HeJ f 0.42 0.872   10 0.276 2.08 -0.34
C3H/HeJ m 0.575 0.729   8 0.258 1.27 0.19
C57BL/6J f 0.1 0.185   8 0.0655 1.85 -0.77
C57BL/6J m 0.12 0.215   10 0.068 1.79 -0.71
C57L/J f 0.16 0.324   10 0.102 2.02 -0.69
C57L/J m 0.25 0.438   8 0.155 1.75 -0.46
C58/J f 0.0 0.0   3 0.0 0.0 -0.91
C58/J m 0.05 0.141   8 0.05 2.83 -0.85
CAST/EiJ f 1.13 0.6   9 0.2 0.529 0.2, 2.0 0.62
CAST/EiJ m 1.16 1.39   9 0.464 1.2 1.34
DBA/2J f 0.98 1.18   10 0.373 1.2 0.42
DBA/2J m 0.771 0.77   7 0.291 0.998 0.2, 2.2 0.57
FVB/NJ f 0.9 0.796   10 0.252 0.884 0.31
FVB/NJ m 0.78 0.715   10 0.226 0.916 0.59
MOLF/EiJ f 0.325 0.399   8 0.141 1.23 -0.47
MOLF/EiJ m 0.133 0.242   6 0.0989 1.82 -0.69
NOD/ShiLtJ f 2.17 1.99   12 0.574 0.918 2.04
NOD/ShiLtJ m 1.23 1.88   12 0.542 1.52 1.48
NZB/BlNJ f 0.0 0.0   6 0.0 0.0 -0.91
NZB/BlNJ m 0.0 0.0   11 0.0 0.0 -0.95
PERA/EiJ f 2.16 2.21   10 0.7 1.02 2.02
PERA/EiJ m 1.45 1.38   12 0.399 0.952 1.92
PL/J f 0.0667 0.156   12 0.0449 2.34 -0.82
PL/J m 0.05 0.141   8 0.05 2.83 -0.85
SJL/J f 0.325 0.413   8 0.146 1.27 -0.47
SJL/J m 0.5 0.612   12 0.177 1.22 0.04
SM/J f 0.185 0.5   13 0.139 2.71 -0.66
SM/J m 0.1 0.17   10 0.0537 1.7 -0.75
SPRET/EiJ f 1.8 1.96   5 0.876 1.09 1.53
SWR/J f 1.64 0.826   10 0.261 0.504 1.32
SWR/J m 1.34 0.619   10 0.196 0.462 0.4, 2.4 1.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.12 0.2668 0.6448 -0.4048
129S1/SvImJ m 0.1556 0.2812 0.7088 -0.3976
A/J f 0.0286 0.3189 0.6558 -0.5987
A/J m 0.0 0.2668 0.5248 -0.5248
AKR/J f 1.1556 0.2812 1.7088 0.6024
AKR/J m 0.9 0.2983 1.4868 0.3132
BALB/cByJ f 0.08 0.2668 0.6048 -0.4448
BALB/cByJ m 0.06 0.2668 0.5848 -0.4648
BTBR T+ Itpr3tf/J f 0.3167 0.2435 0.7958 -0.1624
BTBR T+ Itpr3tf/J m 0.0 0.3444 0.6775 -0.6775
C3H/HeJ f 0.42 0.2668 0.9448 -0.1048
C3H/HeJ m 0.575 0.2983 1.1618 -0.0118
C57BL/6J f 0.1 0.2983 0.6868 -0.4868
C57BL/6J m 0.12 0.2668 0.6448 -0.4048
C57L/J f 0.16 0.2668 0.6848 -0.3648
C57L/J m 0.25 0.2983 0.8368 -0.3368
C58/J f 0.0 0.4871 0.9582 -0.9582
C58/J m 0.05 0.2983 0.6368 -0.5368
CAST/EiJ f 1.1333 0.2812 1.6865 0.5801
CAST/EiJ m 1.1556 0.2812 1.7088 0.6024
DBA/2J f 0.98 0.2668 1.5048 0.4552
DBA/2J m 0.7714 0.3189 1.3987 0.1442
FVB/NJ f 0.9 0.2668 1.4248 0.3752
FVB/NJ m 0.78 0.2668 1.3048 0.2552
MOLF/EiJ f 0.325 0.2983 0.9118 -0.2618
MOLF/EiJ m 0.1333 0.3444 0.8109 -0.5442
NOD/ShiLtJ f 2.1667 0.2435 2.6458 1.6876
NOD/ShiLtJ m 1.2333 0.2435 1.7124 0.7542
NZB/BlNJ f 0.0 0.3444 0.6775 -0.6775
NZB/BlNJ m 0.0 0.2544 0.5004 -0.5004
PERA/EiJ f 2.16 0.2668 2.6848 1.6352
PERA/EiJ m 1.45 0.2435 1.9291 0.9709
PL/J f 0.0667 0.2435 0.5458 -0.4124
PL/J m 0.05 0.2983 0.6368 -0.5368
SJL/J f 0.325 0.2983 0.9118 -0.2618
SJL/J m 0.5 0.2435 0.9791 0.0209
SM/J f 0.1846 0.234 0.6449 -0.2757
SM/J m 0.1 0.2668 0.6248 -0.4248
SWR/J f 1.64 0.2668 2.1648 1.1152
SWR/J m 1.34 0.2668 1.8648 0.8152


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.1378 0.1938 0.519 -0.2435
A/J both 0.0143 0.2079 0.4232 -0.3946
AKR/J both 1.0278 0.205 1.431 0.6246
BALB/cByJ both 0.07 0.1886 0.4411 -0.3011
BTBR T+ Itpr3tf/J both 0.1583 0.2109 0.5732 -0.2566
C3H/HeJ both 0.4975 0.2001 0.8911 0.1039
C57BL/6J both 0.11 0.2001 0.5036 -0.2836
C57L/J both 0.205 0.2001 0.5986 -0.1886
C58/J both 0.025 0.2856 0.5868 -0.5368
CAST/EiJ both 1.1444 0.1989 1.5356 0.7533
DBA/2J both 0.8757 0.2079 1.2846 0.4668
FVB/NJ both 0.84 0.1886 1.2111 0.4689
MOLF/EiJ both 0.2292 0.2278 0.6773 -0.219
NOD/ShiLtJ both 1.7 0.1722 2.0388 1.3612
NZB/BlNJ both 0.0 0.2141 0.4211 -0.4211
PERA/EiJ both 1.805 0.1806 2.1603 1.4497
PL/J both 0.0583 0.1925 0.4371 -0.3204
SJL/J both 0.4125 0.1925 0.7913 0.0337
SM/J both 0.1423 0.1774 0.4913 -0.2067
SWR/J both 1.49 0.1886 1.8611 1.1189




  GWAS USING LINEAR MIXED MODELS