Phenotype measure:   Wahlsten2   of_epm

ID, description, units MPD:16008   of_epm   wildness rating, mean during open field and elevated plus maze   [score]
Data set, strains Wahlsten2   inbred   21 strains     sex: both     age: 10-12wks
Procedure behavior observation
Ontology mappings

  STRAIN COMPARISON PLOT
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Wahlsten2 - wildness rating, mean during open field and elevated plus maze



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains20 strains
Mean of the strain means0.828   score 0.442   score
Median of the strain means0.250   score 0.159   score
SD of the strain means± 1.50 ± 0.586
Coefficient of variation (CV)1.81 1.33
Min–max range of strain means0   –   6.10   score 0   –   2.18   score
Mean sample size per strain9.6   mice 9.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.2974 1.2974 1.9484 0.1637
strain 19 205.3844 10.8097 16.2339 < 0.0001
sex:strain 19 16.1539 0.8502 1.2768 0.1955
Residuals 345 229.7267 0.6659


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.2 0.35   10 0.111 1.75 -0.42
129S1/SvImJ m 0.05 0.158   10 0.05 3.16 -0.67
A/J f 0.0 0.0   8 0.0 0.0 -0.55
A/J m 0.1 0.316   10 0.1 3.16 -0.58
AKR/J f 0.5 0.5   9 0.167 1.0 -0.22
AKR/J m 0.875 0.231   8 0.0818 0.265 0.5, 1.0 0.74
BALB/cByJ f 0.0 0.0   10 0.0 0.0 -0.55
BALB/cByJ m 0.0 0.0   10 0.0 0.0 -0.75
BTBR T+ Itpr3tf/J f 0.292 0.753   12 0.217 2.58 -0.36
BTBR T+ Itpr3tf/J m 0.0 0.0   6 0.0 0.0 -0.75
C3H/HeJ f 0.0 0.0   10 0.0 0.0 -0.55
C3H/HeJ m 0.25 0.378   8 0.134 1.51 -0.33
C57BL/6J f 0.25 0.463   8 0.164 1.85 -0.39
C57BL/6J m 0.0 0.0   10 0.0 0.0 -0.75
C57L/J f 0.05 0.158   10 0.05 3.16 -0.52
C57L/J m 0.25 0.267   8 0.0945 1.07 -0.33
C58/J f 1.39 2.71   9 0.904 1.95 0.37
C58/J m 0.65 0.747   10 0.236 1.15 0.35
CAST/EiJ f 2.35 1.33   10 0.422 0.568 1.0, 5.5 1.02
CAST/EiJ m 1.5 1.22   9 0.408 0.816 0.5, 4.0 1.8
DBA/2J f 0.15 0.242   10 0.0764 1.61 -0.45
DBA/2J m 0.125 0.354   8 0.125 2.83 -0.54
FVB/NJ f 0.0 0.0   10 0.0 0.0 -0.55
FVB/NJ m 0.136 0.452   11 0.136 3.32 -0.52
MOLF/EiJ f 0.5 0.886   8 0.313 1.77 -0.22
MOLF/EiJ m 0.333 0.816   6 0.333 2.45 -0.19
NOD/ShiLtJ f 1.0 1.45   12 0.417 1.45 0.11
NOD/ShiLtJ m 1.0 1.04   12 0.302 1.04 0.95
NZB/BlNJ f 0.0 0.0   6 0.0 0.0 -0.55
NZB/BlNJ m 0.167 0.326   12 0.094 1.95 -0.47
PERA/EiJ f 3.5 1.76   10 0.558 0.504 1.5, 7.0 1.78
PERA/EiJ m 2.18 1.52   11 0.459 0.697 0.5, 5.0 2.96
PL/J f 0.0 0.0   12 0.0 0.0 -0.55
PL/J m 0.0 0.0   8 0.0 0.0 -0.75
SJL/J f 0.0 0.0   8 0.0 0.0 -0.55
SJL/J m 0.125 0.226   12 0.0653 1.81 -0.54
SM/J f 0.357 0.602   14 0.161 1.69 -0.31
SM/J m 0.15 0.337   10 0.107 2.25 -0.5
SPRET/EiJ f 6.1 1.19   5 0.534 0.196 4.5, 7.5 3.52
SWR/J f 0.75 0.95   10 0.3 1.27 -0.05
SWR/J m 0.95 1.04   10 0.329 1.09 0.87


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.2 0.258 0.7075 -0.3075
129S1/SvImJ m 0.05 0.258 0.5575 -0.4575
A/J f 0.0 0.2885 0.5674 -0.5674
A/J m 0.1 0.258 0.6075 -0.4075
AKR/J f 0.5 0.272 1.035 -0.035
AKR/J m 0.875 0.2885 1.4424 0.3076
BALB/cByJ f 0.0 0.258 0.5075 -0.5075
BALB/cByJ m 0.0 0.258 0.5075 -0.5075
BTBR T+ Itpr3tf/J f 0.2917 0.2356 0.755 -0.1717
BTBR T+ Itpr3tf/J m 0.0 0.3331 0.6552 -0.6552
C3H/HeJ f 0.0 0.258 0.5075 -0.5075
C3H/HeJ m 0.25 0.2885 0.8174 -0.3174
C57BL/6J f 0.25 0.2885 0.8174 -0.3174
C57BL/6J m 0.0 0.258 0.5075 -0.5075
C57L/J f 0.05 0.258 0.5575 -0.4575
C57L/J m 0.25 0.2885 0.8174 -0.3174
C58/J f 1.3889 0.272 1.9239 0.8539
C58/J m 0.65 0.258 1.1575 0.1425
CAST/EiJ f 2.35 0.258 2.8575 1.8425
CAST/EiJ m 1.5 0.272 2.035 0.965
DBA/2J f 0.15 0.258 0.6575 -0.3575
DBA/2J m 0.125 0.2885 0.6924 -0.4424
FVB/NJ f 0.0 0.258 0.5075 -0.5075
FVB/NJ m 0.1364 0.246 0.6203 -0.3476
MOLF/EiJ f 0.5 0.2885 1.0674 -0.0674
MOLF/EiJ m 0.3333 0.3331 0.9886 -0.3219
NOD/ShiLtJ f 1.0 0.2356 1.4633 0.5367
NOD/ShiLtJ m 1.0 0.2356 1.4633 0.5367
NZB/BlNJ f 0.0 0.3331 0.6552 -0.6552
NZB/BlNJ m 0.1667 0.2356 0.63 -0.2967
PERA/EiJ f 3.5 0.258 4.0075 2.9925
PERA/EiJ m 2.1818 0.246 2.6657 1.6979
PL/J f 0.0 0.2356 0.4633 -0.4633
PL/J m 0.0 0.2885 0.5674 -0.5674
SJL/J f 0.0 0.2885 0.5674 -0.5674
SJL/J m 0.125 0.2356 0.5883 -0.3383
SM/J f 0.3571 0.2181 0.7861 -0.0718
SM/J m 0.15 0.258 0.6575 -0.3575
SWR/J f 0.75 0.258 1.2575 0.2425
SWR/J m 0.95 0.258 1.4575 0.4425


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.125 0.1825 0.4839 -0.2339
A/J both 0.05 0.1935 0.4307 -0.3307
AKR/J both 0.6875 0.1983 1.0774 0.2976
BALB/cByJ both 0.0 0.1825 0.3589 -0.3589
BTBR T+ Itpr3tf/J both 0.1458 0.204 0.5471 -0.2554
C3H/HeJ both 0.125 0.1935 0.5057 -0.2557
C57BL/6J both 0.125 0.1935 0.5057 -0.2557
C57L/J both 0.15 0.1935 0.5307 -0.2307
C58/J both 1.0194 0.1875 1.3882 0.6507
CAST/EiJ both 1.925 0.1875 2.2937 1.5563
DBA/2J both 0.1375 0.1935 0.5182 -0.2432
FVB/NJ both 0.0682 0.1783 0.4188 -0.2825
MOLF/EiJ both 0.4167 0.2203 0.8501 -0.0167
NOD/ShiLtJ both 1.0 0.1666 1.3276 0.6724
NZB/BlNJ both 0.0833 0.204 0.4846 -0.3179
PERA/EiJ both 2.8409 0.1783 3.1915 2.4903
PL/J both 0.0 0.1862 0.3663 -0.3663
SJL/J both 0.0625 0.1862 0.4288 -0.3038
SM/J both 0.2536 0.1689 0.5858 -0.0787
SWR/J both 0.85 0.1825 1.2089 0.4911




  GWAS USING LINEAR MIXED MODELS