Phenotype measure:   Wahlsten2   wildness

ID, description, units MPD:16007   wildness   wildness rating, sum of capture and hold means   [score]
Data set, strains Wahlsten2   inbred   21 strains     sex: both     age: 10-12wks
Procedure behavior observation
Ontology mappings


  STRAIN COMPARISON PLOT
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Wahlsten2 - wildness rating, sum of capture and hold means



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains20 strains
Mean of the strain means0.782   score 0.489   score
Median of the strain means0.317   score 0.371   score
SD of the strain means± 0.947 ± 0.461
Coefficient of variation (CV)1.21 0.944
Min–max range of strain means0.0667   –   3.77   score 0.0111   –   1.64   score
Mean sample size per strain8.5   mice 8.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.8596 0.8596 2.9222 0.0884
strain 19 111.0378 5.8441 19.8666 < 0.0001
sex:strain 19 5.51 0.29 0.9858 0.4777
Residuals 295 86.7791 0.2942


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.175 0.128   8 0.0453 0.733 0.0667, 0.4 -0.64
129S1/SvImJ m 0.142 0.103   8 0.0366 0.731 -0.75
A/J f 0.114 0.167   7 0.063 1.46 -0.71
A/J m 0.0417 0.0345   8 0.0122 0.828 -0.97
AKR/J f 0.8 0.398   7 0.15 0.497 0.533, 1.67 0.02
AKR/J m 0.759 0.239   8 0.0847 0.316 0.467, 1.07 0.59
BALB/cByJ f 0.187 0.133   10 0.042 0.711 0.0667, 0.467 -0.63
BALB/cByJ m 0.0583 0.075   8 0.0265 1.29 -0.93
BTBR T+ Itpr3tf/J f 0.506 0.379   12 0.109 0.749 0.0667, 1.2 -0.29
BTBR T+ Itpr3tf/J m 0.4 0.211   4 0.105 0.528 0.133, 0.6 -0.19
C3H/HeJ f 0.317 0.174   8 0.0614 0.548 0.133, 0.6 -0.49
C3H/HeJ m 0.408 0.263   8 0.093 0.644 0.0667, 0.867 -0.18
C57BL/6J f 0.283 0.111   8 0.0394 0.393 0.133, 0.467 -0.53
C57BL/6J m 0.258 0.265   8 0.0939 1.03 -0.5
C57L/J f 0.22 0.109   10 0.0345 0.496 0.0667, 0.4 -0.59
C57L/J m 0.2 0.0943   6 0.0385 0.471 0.0667, 0.333 -0.63
C58/J f 0.2 0.29   3 0.168 1.45 -0.62
C58/J m 0.342 0.238   8 0.084 0.695 0.0667, 0.733 -0.32
CAST/EiJ f 1.62 0.881   8 0.312 0.543 0.667, 3.4 0.88
CAST/EiJ m 1.08 0.578   8 0.204 0.537 0.4, 1.73 1.28
DBA/2J f 0.775 0.786   8 0.278 1.01 0.0667, 2.13 -0.01
DBA/2J m 0.534 0.394   7 0.149 0.738 0.133, 1.27 0.1
FVB/NJ f 0.667 0.475   10 0.15 0.711 -0.12
FVB/NJ m 0.534 0.44   8 0.156 0.825 0.133, 1.47 0.1
MOLF/EiJ f 0.692 0.703   8 0.249 1.02 0.133, 2.13 -0.1
MOLF/EiJ m 0.478 0.217   6 0.0885 0.454 0.133, 0.8 -0.02
NOD/ShiLtJ f 1.4 1.24   8 0.438 0.884 0.0667, 3.2 0.65
NOD/ShiLtJ m 1.11 1.32   12 0.38 1.18 1.35
NZB/BlNJ f 0.133 0.152   6 0.0621 1.14 -0.69
NZB/BlNJ m 0.139 0.131   11 0.0396 0.943 -0.76
PERA/EiJ f 2.63 1.27   10 0.4 0.481 0.667, 4.8 1.95
PERA/EiJ m 1.64 0.942   11 0.284 0.574 0.533, 3.13 2.49
PL/J f 0.0667 0.13   12 0.0376 1.95 -0.76
PL/J m 0.0111 0.0272   6 0.0111 2.45 -1.04
SJL/J f 0.192 0.161   8 0.057 0.841 -0.62
SJL/J m 0.267 0.239   10 0.0757 0.898 -0.48
SM/J f 0.2 0.22   13 0.0609 1.1 -0.62
SM/J m 0.075 0.0972   8 0.0344 1.3 -0.9
SPRET/EiJ f 3.77 0.863   5 0.386 0.229 3.13, 4.93 3.16
SWR/J f 1.48 0.454   8 0.161 0.306 0.8, 2.2 0.74
SWR/J m 1.3 0.727   10 0.23 0.558 0.667, 2.87 1.76


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.1749 0.1918 0.5523 0.0
129S1/SvImJ m 0.1416 0.1918 0.5189 0.0
A/J f 0.1142 0.205 0.5177 0.0
A/J m 0.0417 0.1918 0.4191 0.0
AKR/J f 0.8003 0.205 1.2037 0.3968
AKR/J m 0.7587 0.1918 1.1361 0.3814
BALB/cByJ f 0.1868 0.1715 0.5243 0.0
BALB/cByJ m 0.0583 0.1918 0.4357 0.0
BTBR T+ Itpr3tf/J f 0.5056 0.1566 0.8137 0.1974
BTBR T+ Itpr3tf/J m 0.3998 0.2712 0.9335 0.0
C3H/HeJ f 0.3166 0.1918 0.694 0.0
C3H/HeJ m 0.4083 0.1918 0.7857 0.031
C57BL/6J f 0.2834 0.1918 0.6608 0.0
C57BL/6J m 0.2585 0.1918 0.6358 0.0
C57L/J f 0.2199 0.1715 0.5574 0.0
C57L/J m 0.2 0.2214 0.6357 0.0
C58/J f 0.1999 0.3131 0.8162 0.0
C58/J m 0.3416 0.1918 0.719 0.0
CAST/EiJ f 1.6238 0.1918 2.0011 1.2464
CAST/EiJ m 1.0759 0.1918 1.4533 0.6985
DBA/2J f 0.7746 0.1918 1.152 0.3972
DBA/2J m 0.5337 0.205 0.9372 0.1303
FVB/NJ f 0.6672 0.1715 1.0047 0.3297
FVB/NJ m 0.5336 0.1918 0.911 0.1562
MOLF/EiJ f 0.6917 0.1918 1.0691 0.3144
MOLF/EiJ m 0.4777 0.2214 0.9134 0.0419
NOD/ShiLtJ f 1.4005 0.1918 1.7778 1.0231
NOD/ShiLtJ m 1.1106 0.1566 1.4187 0.8024
NZB/BlNJ f 0.1333 0.2214 0.5691 0.0
NZB/BlNJ m 0.1393 0.1635 0.4612 0.0
PERA/EiJ f 2.6337 0.1715 2.9712 2.2962
PERA/EiJ m 1.6412 0.1635 1.963 1.3193
PL/J f 0.0667 0.1566 0.3748 0.0
PL/J m 0.0111 0.2214 0.4469 0.0
SJL/J f 0.1916 0.1918 0.5689 0.0
SJL/J m 0.2665 0.1715 0.6041 0.0
SM/J f 0.2001 0.1504 0.4961 0.0
SM/J m 0.075 0.1918 0.4523 0.0
SWR/J f 1.4838 0.1918 1.8611 1.1064
SWR/J m 1.3011 0.1715 1.6386 0.9636


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.1582 0.1356 0.4251 0.0
A/J both 0.078 0.1404 0.3542 0.0
AKR/J both 0.7795 0.1404 1.0557 0.5033
BALB/cByJ both 0.1225 0.1286 0.3757 0.0
BTBR T+ Itpr3tf/J both 0.4527 0.1566 0.7608 0.1445
C3H/HeJ both 0.3625 0.1356 0.6293 0.0956
C57BL/6J both 0.2709 0.1356 0.5378 0.0041
C57L/J both 0.2099 0.14 0.4855 0.0
C58/J both 0.2707 0.1836 0.6321 0.0
CAST/EiJ both 1.3498 0.1356 1.6167 1.083
DBA/2J both 0.6542 0.1404 0.9304 0.3779
FVB/NJ both 0.6004 0.1286 0.8536 0.3473
MOLF/EiJ both 0.5847 0.1465 0.8729 0.2965
NOD/ShiLtJ both 1.2555 0.1238 1.4991 1.0119
NZB/BlNJ both 0.1363 0.1376 0.4072 0.0
PERA/EiJ both 2.1374 0.1185 2.3706 1.9042
PL/J both 0.0389 0.1356 0.3058 0.0
SJL/J both 0.229 0.1286 0.4822 0.0
SM/J both 0.1375 0.1219 0.3773 0.0
SWR/J both 1.3924 0.1286 1.6456 1.1393




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.