Phenotype measure:   Wahlsten2   hold

ID, description, units MPD:16006   hold   hold rating, overall mean   [score]
Data set, strains Wahlsten2   inbred   21 strains     sex: both     age: 10-12wks
Procedure behavior observation
Ontology mappings


  STRAIN COMPARISON PLOT
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Wahlsten2 - hold rating, overall mean



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains20 strains
Mean of the strain means0.327   score 0.266   score
Median of the strain means0.225   score 0.192   score
SD of the strain means± 0.304 ± 0.234
Coefficient of variation (CV)0.930 0.881
Min–max range of strain means0.00556   –   1.16   score 0   –   0.787   score
Mean sample size per strain8.5   mice 8.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0044 0.0044 0.0694 0.7924
strain 19 18.4103 0.969 15.1171 < 0.0001
sex:strain 19 0.3853 0.0203 0.3164 0.9976
Residuals 298 19.101 0.0641


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.175 0.128   8 0.0453 0.733 0.0667, 0.4 -0.5
129S1/SvImJ m 0.148 0.119   9 0.0397 0.804 0.0, 0.333 -0.5
A/J f 0.0665 0.0665   7 0.0251 1.0 0.0, 0.133 -0.86
A/J m 0.0417 0.0345   8 0.0122 0.828 0.0, 0.0667 -0.96
AKR/J f 0.715 0.189   7 0.0713 0.264 0.533, 1.07 1.28
AKR/J m 0.733 0.211   8 0.0745 0.287 0.467, 1.0 1.99
BALB/cByJ f 0.14 0.119   10 0.0378 0.854 0.0, 0.4 -0.61
BALB/cByJ m 0.0333 0.0503   8 0.0178 1.51 0.0, 0.133 -0.99
BTBR T+ Itpr3tf/J f 0.272 0.159   12 0.046 0.586 0.0667, 0.6 -0.18
BTBR T+ Itpr3tf/J m 0.183 0.0641   4 0.0321 0.35 0.133, 0.267 -0.36
C3H/HeJ f 0.225 0.1   8 0.0355 0.447 0.133, 0.4 -0.33
C3H/HeJ m 0.15 0.127   8 0.0449 0.848 0.0, 0.333 -0.5
C57BL/6J f 0.192 0.115   8 0.0408 0.602 0.133, 0.467 -0.44
C57BL/6J m 0.2 0.129   8 0.0455 0.643 0.0, 0.4 -0.28
C57L/J f 0.16 0.0843   10 0.0267 0.528 0.0667, 0.333 -0.55
C57L/J m 0.155 0.0545   6 0.0222 0.35 0.0667, 0.2 -0.47
C58/J f 0.0889 0.102   3 0.0588 1.15 0.0, 0.2 -0.78
C58/J m 0.142 0.0973   8 0.0344 0.687 0.0, 0.267 -0.53
CAST/EiJ f 0.417 0.486   8 0.172 1.17 0.0, 1.2 0.3
CAST/EiJ m 0.342 0.395   8 0.14 1.16 0.0, 1.07 0.32
DBA/2J f 0.35 0.238   8 0.0843 0.681 0.0667, 0.733 0.08
DBA/2J m 0.375 0.341   8 0.12 0.908 0.0667, 1.07 0.46
FVB/NJ f 0.247 0.157   10 0.0498 0.638 0.0, 0.467 -0.26
FVB/NJ m 0.208 0.221   8 0.0781 1.06 0.0, 0.733 -0.25
MOLF/EiJ f 0.233 0.271   8 0.0959 1.16 0.0, 0.733 -0.31
MOLF/EiJ m 0.378 0.138   6 0.0563 0.365 0.133, 0.533 0.48
NOD/ShiLtJ f 0.733 0.726   8 0.257 0.99 0.0667, 2.0 1.34
NOD/ShiLtJ m 0.6 0.63   12 0.182 1.05 0.0, 1.73 1.42
NZB/BlNJ f 0.0333 0.0557   6 0.0227 1.67 0.0, 0.133 -0.97
NZB/BlNJ m 0.0545 0.0654   11 0.0197 1.2 0.0, 0.2 -0.9
PERA/EiJ f 0.674 0.27   10 0.0853 0.401 0.267, 1.07 1.14
PERA/EiJ m 0.533 0.295   12 0.0853 0.554 0.0, 1.0 1.14
PL/J f 0.00556 0.0193   12 0.00556 3.46 0.0, 0.0667 -1.06
PL/J m 0.0 0.0   6 0.0 0.0 0.0, 0.0 -1.14
SJL/J f 0.175 0.155   8 0.0548 0.886 0.0, 0.4 -0.5
SJL/J m 0.22 0.194   10 0.0613 0.881 0.0, 0.533 -0.2
SM/J f 0.0616 0.1   13 0.0277 1.62 0.0, 0.267 -0.87
SM/J m 0.0417 0.0707   8 0.025 1.7 0.0, 0.2 -0.96
SPRET/EiJ f 1.16 0.257   5 0.115 0.221 0.867, 1.47 2.74
SWR/J f 0.734 0.318   8 0.112 0.433 0.333, 1.27 1.34
SWR/J m 0.787 0.347   10 0.11 0.441 0.4, 1.4 2.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.1749 0.0895 0.351 -0.0013
129S1/SvImJ m 0.148 0.0844 0.3141 -0.0181
A/J f 0.0665 0.0957 0.2548 -0.1218
A/J m 0.0417 0.0895 0.2178 -0.1345
AKR/J f 0.7146 0.0957 0.9029 0.5263
AKR/J m 0.7334 0.0895 0.9095 0.5572
BALB/cByJ f 0.14 0.0801 0.2975 -0.0176
BALB/cByJ m 0.0333 0.0895 0.2095 -0.1429
BTBR T+ Itpr3tf/J f 0.2722 0.0731 0.4161 0.1284
BTBR T+ Itpr3tf/J m 0.1832 0.1266 0.4324 -0.0659
C3H/HeJ f 0.2249 0.0895 0.401 0.0487
C3H/HeJ m 0.1499 0.0895 0.326 -0.0263
C57BL/6J f 0.1915 0.0895 0.3677 0.0153
C57BL/6J m 0.2001 0.0895 0.3762 0.0239
C57L/J f 0.1598 0.0801 0.3174 0.0023
C57L/J m 0.1554 0.1034 0.3589 -0.048
C58/J f 0.0889 0.1462 0.3766 -0.1988
C58/J m 0.1416 0.0895 0.3178 -0.0345
CAST/EiJ f 0.417 0.0895 0.5932 0.2408
CAST/EiJ m 0.342 0.0895 0.5181 0.1658
DBA/2J f 0.3501 0.0895 0.5262 0.1739
DBA/2J m 0.3753 0.0895 0.5515 0.1992
FVB/NJ f 0.2467 0.0801 0.4042 0.0891
FVB/NJ m 0.2081 0.0895 0.3843 0.032
MOLF/EiJ f 0.2332 0.0895 0.4094 0.0571
MOLF/EiJ m 0.3777 0.1034 0.5811 0.1743
NOD/ShiLtJ f 0.7334 0.0895 0.9096 0.5573
NOD/ShiLtJ m 0.5998 0.0731 0.7436 0.456
NZB/BlNJ f 0.0333 0.1034 0.2367 -0.1701
NZB/BlNJ m 0.0545 0.0763 0.2048 -0.0957
PERA/EiJ f 0.6737 0.0801 0.8313 0.5161
PERA/EiJ m 0.5335 0.0731 0.6773 0.3896
PL/J f 0.0056 0.0731 0.1494 -0.1383
PL/J m 0.0 0.1034 0.2034 -0.2034
SJL/J f 0.1749 0.0895 0.351 -0.0013
SJL/J m 0.2199 0.0801 0.3775 0.0624
SM/J f 0.0616 0.0702 0.1998 -0.0766
SM/J m 0.0417 0.0895 0.2178 -0.1345
SWR/J f 0.7338 0.0895 0.9099 0.5576
SWR/J m 0.7866 0.0801 0.9442 0.629


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.1614 0.0615 0.2825 0.0404
A/J both 0.0541 0.0655 0.183 -0.0748
AKR/J both 0.724 0.0655 0.8529 0.595
BALB/cByJ both 0.0866 0.06 0.2048 -0.0315
BTBR T+ Itpr3tf/J both 0.2277 0.0731 0.3716 0.0839
C3H/HeJ both 0.1874 0.0633 0.3119 0.0628
C57BL/6J both 0.1958 0.0633 0.3204 0.0712
C57L/J both 0.1576 0.0654 0.2863 0.029
C58/J both 0.1153 0.0857 0.2839 -0.0534
CAST/EiJ both 0.3795 0.0633 0.504 0.2549
DBA/2J both 0.3627 0.0633 0.4873 0.2382
FVB/NJ both 0.2274 0.06 0.3456 0.1092
MOLF/EiJ both 0.3055 0.0684 0.44 0.1709
NOD/ShiLtJ both 0.6666 0.0578 0.7803 0.5529
NZB/BlNJ both 0.0439 0.0642 0.1703 -0.0825
PERA/EiJ both 0.6036 0.0542 0.7103 0.4969
PL/J both 0.0028 0.0633 0.1273 -0.1218
SJL/J both 0.1974 0.06 0.3156 0.0792
SM/J both 0.0516 0.0569 0.1636 -0.0603
SWR/J both 0.7602 0.06 0.8783 0.642




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.