Phenotype measure:   Wahlsten2   nplacid

ID, description, units MPD:16004   nplacid   number of placid tests, capture ratings + hold ratings   [score]
Data set, strains Wahlsten2   inbred   21 strains     sex: both     age: 10-12wks
Procedure behavior observation
Ontology mappings

  STRAIN COMPARISON PLOT
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Wahlsten2 - number of placid tests, capture ratings + hold ratings



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains20 strains
Mean of the strain means9.81   score 10.5   score
Median of the strain means11.0   score 11.4   score
SD of the strain means± 3.42 ± 2.92
Coefficient of variation (CV)0.349 0.278
Min–max range of strain means4.44   –   14.3   score 4.12   –   13.9   score
Mean sample size per strain9.6   mice 9.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 25.5704 25.5704 3.0704 0.0806
strain 19 3516.6679 185.0878 22.2245 < 0.0001
sex:strain 19 97.0855 5.1098 0.6136 0.8962
Residuals 346 2881.5155 8.3281


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.0 3.43   10 1.09 0.312 4.0, 14.0 0.35
129S1/SvImJ m 12.6 1.65   10 0.521 0.131 10.0, 15.0 0.71
A/J f 13.5 1.77   8 0.627 0.131 10.0, 15.0 1.08
A/J m 13.5 1.96   10 0.619 0.145 9.0, 15.0 1.02
AKR/J f 4.44 2.07   9 0.689 0.465 2.0, 7.0 -1.57
AKR/J m 4.12 3.0   8 1.06 0.727 -2.19
BALB/cByJ f 12.5 1.51   10 0.477 0.121 10.0, 14.0 0.78
BALB/cByJ m 13.5 1.72   10 0.543 0.127 10.0, 15.0 1.02
BTBR T+ Itpr3tf/J f 11.0 2.7   12 0.778 0.245 5.0, 14.0 0.35
BTBR T+ Itpr3tf/J m 11.3 1.97   6 0.803 0.174 9.0, 14.0 0.27
C3H/HeJ f 10.6 2.84   10 0.897 0.268 5.0, 13.0 0.23
C3H/HeJ m 10.4 2.72   8 0.962 0.262 7.0, 14.0 -0.04
C57BL/6J f 12.0 0.926   8 0.327 0.0772 11.0, 13.0 0.64
C57BL/6J m 12.0 2.16   10 0.683 0.18 8.0, 15.0 0.51
C57L/J f 12.6 0.966   10 0.306 0.0767 11.0, 14.0 0.81
C57L/J m 11.5 2.88   8 1.02 0.25 6.0, 14.0 0.34
C58/J f 9.67 3.61   9 1.2 0.373 5.0, 15.0 -0.04
C58/J m 11.7 1.7   10 0.539 0.146 10.0, 14.0 0.41
CAST/EiJ f 5.0 3.74   10 1.18 0.748 -1.41
CAST/EiJ m 5.89 3.82   9 1.27 0.649 -1.58
DBA/2J f 8.0 4.32   10 1.37 0.54 1.0, 14.0 -0.53
DBA/2J m 9.5 3.46   8 1.22 0.365 3.0, 13.0 -0.35
FVB/NJ f 8.7 3.47   10 1.1 0.398 4.0, 15.0 -0.33
FVB/NJ m 9.27 3.2   11 0.964 0.345 4.0, 13.0 -0.42
MOLF/EiJ f 11.9 3.09   8 1.09 0.26 6.0, 14.0 0.61
MOLF/EiJ m 12.3 1.37   6 0.558 0.111 10.0, 14.0 0.61
NOD/ShiLtJ f 6.17 4.57   12 1.32 0.741 -1.06
NOD/ShiLtJ m 8.08 5.16   12 1.49 0.638 -0.83
NZB/BlNJ f 14.3 0.516   6 0.211 0.036 14.0, 15.0 1.31
NZB/BlNJ m 13.8 0.718   12 0.207 0.0519 13.0, 15.0 1.12
PERA/EiJ f 5.0 4.22   10 1.33 0.843 -1.41
PERA/EiJ m 7.08 3.2   12 0.925 0.452 2.0, 11.0 -1.17
PL/J f 14.0 1.95   12 0.564 0.14 9.0, 15.0 1.22
PL/J m 13.9 1.89   8 0.666 0.136 10.0, 15.0 1.16
SJL/J f 12.1 2.42   8 0.854 0.199 9.0, 15.0 0.67
SJL/J m 10.7 3.96   12 1.14 0.371 3.0, 15.0 0.06
SM/J f 13.4 1.34   14 0.357 0.1 11.0, 15.0 1.05
SM/J m 13.1 2.56   10 0.809 0.195 7.0, 15.0 0.88
SPRET/EiJ f 5.2 3.9   5 1.74 0.75 1.0, 9.0 -1.35
SWR/J f 5.0 2.71   10 0.856 0.542 2.0, 9.0 -1.41
SWR/J m 6.0 2.79   10 0.882 0.465 1.0, 10.0 -1.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.0 0.9126 12.7949 9.2051
129S1/SvImJ m 12.6 0.9126 14.3949 10.8051
A/J f 13.5 1.0203 15.5068 11.4932
A/J m 13.5 0.9126 15.2949 11.7051
AKR/J f 4.4444 0.9619 6.3364 2.5524
AKR/J m 4.125 1.0203 6.1318 2.1182
BALB/cByJ f 12.5 0.9126 14.2949 10.7051
BALB/cByJ m 13.5 0.9126 15.2949 11.7051
BTBR T+ Itpr3tf/J f 11.0 0.8331 12.6385 9.3615
BTBR T+ Itpr3tf/J m 11.3333 1.1781 13.6506 9.0161
C3H/HeJ f 10.6 0.9126 12.3949 8.8051
C3H/HeJ m 10.375 1.0203 12.3818 8.3682
C57BL/6J f 12.0 1.0203 14.0068 9.9932
C57BL/6J m 12.0 0.9126 13.7949 10.2051
C57L/J f 12.6 0.9126 14.3949 10.8051
C57L/J m 11.5 1.0203 13.5068 9.4932
C58/J f 9.6667 0.9619 11.5587 7.7747
C58/J m 11.7 0.9126 13.4949 9.9051
CAST/EiJ f 5.0 0.9126 6.7949 3.2051
CAST/EiJ m 5.8889 0.9619 7.7809 3.9969
DBA/2J f 8.0 0.9126 9.7949 6.2051
DBA/2J m 9.5 1.0203 11.5068 7.4932
FVB/NJ f 8.7 0.9126 10.4949 6.9051
FVB/NJ m 9.2727 0.8701 10.9841 7.5613
MOLF/EiJ f 11.875 1.0203 13.8818 9.8682
MOLF/EiJ m 12.3333 1.1781 14.6506 10.0161
NOD/ShiLtJ f 6.1667 0.8331 7.8052 4.5281
NOD/ShiLtJ m 8.0833 0.8331 9.7219 6.4448
NZB/BlNJ f 14.3333 1.1781 16.6506 12.0161
NZB/BlNJ m 13.8333 0.8331 15.4719 12.1948
PERA/EiJ f 5.0 0.9126 6.7949 3.2051
PERA/EiJ m 7.0833 0.8331 8.7219 5.4448
PL/J f 14.0 0.8331 15.6385 12.3615
PL/J m 13.875 1.0203 15.8818 11.8682
SJL/J f 12.125 1.0203 14.1318 10.1182
SJL/J m 10.6667 0.8331 12.3052 9.0281
SM/J f 13.3571 0.7713 14.8741 11.8402
SM/J m 13.1 0.9126 14.8949 11.3051
SWR/J f 5.0 0.9126 6.7949 3.2051
SWR/J m 6.0 0.9126 7.7949 4.2051


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 11.8 0.6453 13.0692 10.5308
A/J both 13.5 0.6844 14.8462 12.1538
AKR/J both 4.2847 0.7011 5.6637 2.9057
BALB/cByJ both 13.0 0.6453 14.2692 11.7308
BTBR T+ Itpr3tf/J both 11.1667 0.7215 12.5857 9.7477
C3H/HeJ both 10.4875 0.6844 11.8337 9.1413
C57BL/6J both 12.0 0.6844 13.3462 10.6538
C57L/J both 12.05 0.6844 13.3962 10.7038
C58/J both 10.6833 0.663 11.9873 9.3794
CAST/EiJ both 5.4444 0.663 6.7484 4.1405
DBA/2J both 8.75 0.6844 10.0962 7.4038
FVB/NJ both 8.9864 0.6305 10.2264 7.7464
MOLF/EiJ both 12.1042 0.7793 13.6369 10.5715
NOD/ShiLtJ both 7.125 0.5891 8.2836 5.9664
NZB/BlNJ both 14.0833 0.7215 15.5023 12.6643
PERA/EiJ both 6.0417 0.6178 7.2568 4.8265
PL/J both 13.9375 0.6586 15.2329 12.6421
SJL/J both 11.3958 0.6586 12.6912 10.1005
SM/J both 13.2286 0.5974 14.4036 12.0535
SWR/J both 5.5 0.6453 6.7692 4.2308




  GWAS USING LINEAR MIXED MODELS