Phenotype measure:   Wahlsten2   nsqueak


  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Wahlsten2 - number of tests with squeaks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains20 strains
Mean of the strain means2.14   score 1.84   score
Median of the strain means1.80   score 1.29   score
SD of the strain means± 2.31 ± 2.37
Coefficient of variation (CV)1.08 1.29
Min–max range of strain means0   –   8.78   score 0   –   10.6   score
Mean sample size per strain9.6   mice 9.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 17.8314 17.8314 7.2301 0.0075
strain 19 1782.045 93.7918 38.0296 < 0.0001
sex:strain 19 89.7651 4.7245 1.9156 0.0123
Residuals 346 853.3352 2.4663


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.4 2.46   10 0.777 0.723 1.0, 8.0 0.55
129S1/SvImJ m 2.1 1.52   10 0.482 0.726 0.11
A/J f 0.625 0.916   8 0.324 1.47 -0.66
A/J m 0.7 0.483   10 0.153 0.69 -0.48
AKR/J f 8.78 1.79   9 0.596 0.204 6.0, 11.0 2.88
AKR/J m 10.6 2.77   8 0.981 0.261 7.0, 15.0 3.69
BALB/cByJ f 1.9 1.37   10 0.433 0.721 -0.1
BALB/cByJ m 0.6 0.843   10 0.267 1.41 -0.52
BTBR T+ Itpr3tf/J f 3.0 2.76   12 0.798 0.921 0.37
BTBR T+ Itpr3tf/J m 1.5 1.05   6 0.428 0.699 -0.15
C3H/HeJ f 2.0 1.33   10 0.422 0.667 -0.06
C3H/HeJ m 1.25 1.16   8 0.412 0.932 -0.25
C57BL/6J f 1.25 0.886   8 0.313 0.709 -0.38
C57BL/6J m 1.4 0.843   10 0.267 0.602 -0.19
C57L/J f 1.8 0.632   10 0.2 0.351 1.0, 3.0 -0.15
C57L/J m 1.88 0.835   8 0.295 0.445 1.0, 3.0 0.01
C58/J f 0.444 0.726   9 0.242 1.63 -0.73
C58/J m 0.9 0.994   10 0.314 1.1 -0.4
CAST/EiJ f 0.5 0.85   10 0.269 1.7 -0.71
CAST/EiJ m 0.222 0.441   9 0.147 1.98 -0.68
DBA/2J f 4.9 2.64   10 0.836 0.54 1.0, 10.0 1.2
DBA/2J m 4.12 3.18   8 1.12 0.771 1.0, 10.0 0.96
FVB/NJ f 3.1 2.56   10 0.809 0.825 0.42
FVB/NJ m 1.18 1.08   11 0.325 0.913 -0.28
MOLF/EiJ f 0.0 0.0   8 0.0 0.0 -0.93
MOLF/EiJ m 0.0 0.0   6 0.0 0.0 -0.78
NOD/ShiLtJ f 1.08 0.9   12 0.26 0.831 -0.46
NOD/ShiLtJ m 1.92 2.11   12 0.609 1.1 0.03
NZB/BlNJ f 0.167 0.408   6 0.167 2.45 -0.85
NZB/BlNJ m 0.417 0.515   12 0.149 1.24 -0.6
PERA/EiJ f 1.8 1.48   10 0.467 0.82 -0.15
PERA/EiJ m 1.33 1.15   12 0.333 0.866 -0.22
PL/J f 0.0833 0.289   12 0.0833 3.46 -0.89
PL/J m 0.0 0.0   8 0.0 0.0 -0.78
SJL/J f 2.62 2.33   8 0.822 0.886 0.21
SJL/J m 2.17 2.04   12 0.588 0.94 0.14
SM/J f 0.214 0.426   14 0.114 1.99 -0.83
SM/J m 0.3 0.483   10 0.153 1.61 -0.65
SPRET/EiJ f 0.4 0.548   5 0.245 1.37 -0.75
SWR/J f 6.8 2.86   10 0.904 0.421 3.0, 11.0 2.02
SWR/J m 4.3 2.31   10 0.731 0.538 1.0, 9.0 1.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.4 0.4966 4.3768 2.4232
129S1/SvImJ m 2.1 0.4966 3.0768 1.1232
A/J f 0.625 0.5552 1.7171 -0.4671
A/J m 0.7 0.4966 1.6768 -0.2768
AKR/J f 8.7778 0.5235 9.8074 7.7482
AKR/J m 10.625 0.5552 11.7171 9.5329
BALB/cByJ f 1.9 0.4966 2.8768 0.9232
BALB/cByJ m 0.6 0.4966 1.5768 -0.3768
BTBR T+ Itpr3tf/J f 3.0 0.4533 3.8917 2.1083
BTBR T+ Itpr3tf/J m 1.5 0.6411 2.761 0.239
C3H/HeJ f 2.0 0.4966 2.9768 1.0232
C3H/HeJ m 1.25 0.5552 2.3421 0.1579
C57BL/6J f 1.25 0.5552 2.3421 0.1579
C57BL/6J m 1.4 0.4966 2.3768 0.4232
C57L/J f 1.8 0.4966 2.7768 0.8232
C57L/J m 1.875 0.5552 2.9671 0.7829
C58/J f 0.4444 0.5235 1.474 -0.5852
C58/J m 0.9 0.4966 1.8768 -0.0768
CAST/EiJ f 0.5 0.4966 1.4768 -0.4768
CAST/EiJ m 0.2222 0.5235 1.2518 -0.8074
DBA/2J f 4.9 0.4966 5.8768 3.9232
DBA/2J m 4.125 0.5552 5.2171 3.0329
FVB/NJ f 3.1 0.4966 4.0768 2.1232
FVB/NJ m 1.1818 0.4735 2.1131 0.2505
MOLF/EiJ f 0.0 0.5552 1.0921 -1.0921
MOLF/EiJ m 0.0 0.6411 1.261 -1.261
NOD/ShiLtJ f 1.0833 0.4533 1.975 0.1917
NOD/ShiLtJ m 1.9167 0.4533 2.8083 1.025
NZB/BlNJ f 0.1667 0.6411 1.4277 -1.0943
NZB/BlNJ m 0.4167 0.4533 1.3083 -0.475
PERA/EiJ f 1.8 0.4966 2.7768 0.8232
PERA/EiJ m 1.3333 0.4533 2.225 0.4417
PL/J f 0.0833 0.4533 0.975 -0.8083
PL/J m 0.0 0.5552 1.0921 -1.0921
SJL/J f 2.625 0.5552 3.7171 1.5329
SJL/J m 2.1667 0.4533 3.0583 1.275
SM/J f 0.2143 0.4197 1.0398 -0.6112
SM/J m 0.3 0.4966 1.2768 -0.6768
SWR/J f 6.8 0.4966 7.7768 5.8232
SWR/J m 4.3 0.4966 5.2768 3.3232


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.75 0.3512 3.4407 2.0593
A/J both 0.6625 0.3725 1.3951 -0.0701
AKR/J both 9.7014 0.3815 10.4518 8.9509
BALB/cByJ both 1.25 0.3512 1.9407 0.5593
BTBR T+ Itpr3tf/J both 2.25 0.3926 3.0222 1.4778
C3H/HeJ both 1.625 0.3725 2.3576 0.8924
C57BL/6J both 1.325 0.3725 2.0576 0.5924
C57L/J both 1.8375 0.3725 2.5701 1.1049
C58/J both 0.6722 0.3608 1.3818 -0.0374
CAST/EiJ both 0.3611 0.3608 1.0707 -0.3485
DBA/2J both 4.5125 0.3725 5.2451 3.7799
FVB/NJ both 2.1409 0.3431 2.8157 1.4661
MOLF/EiJ both 0.0 0.4241 0.8341 -0.8341
NOD/ShiLtJ both 1.5 0.3206 2.1305 0.8695
NZB/BlNJ both 0.2917 0.3926 1.0639 -0.4805
PERA/EiJ both 1.5667 0.3362 2.2279 0.9054
PL/J both 0.0417 0.3584 0.7466 -0.6633
SJL/J both 2.3958 0.3584 3.1008 1.6909
SM/J both 0.2571 0.3251 0.8966 -0.3823
SWR/J both 5.55 0.3512 6.2407 4.8593




  GWAS USING LINEAR MIXED MODELS