Project measure / variable:   Jaxwest1   BMD_femurR

ID, description, units MPD:15132   BMD_femurR   bone mineral density (BMD) of right femur   [g/cm2]  
Data set, strains Jaxwest1   inbred   7 strains     sex: both     age: 11-13wks
Procedure DXA
Ontology mappings

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  STRAIN COMPARISON PLOT
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Jaxwest1 - bone mineral density (BMD) of right femur



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains7 strains
Mean of the strain means0.0663   g/cm2 0.0712   g/cm2
Median of the strain means0.0667   g/cm2 0.0709   g/cm2
SD of the strain means± 0.00570 ± 0.00612
Coefficient of variation (CV)0.0859 0.0859
Min–max range of strain means0.0586   –   0.0746   g/cm2 0.0631   –   0.0800   g/cm2
Mean sample size per strain7.9   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0007 0.0007 47.6248 < 0.0001
strain 6 0.003 0.0005 34.9924 < 0.0001
sex:strain 6 0.0003 0.0 3.317 0.0052
Residuals 96 0.0014 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0667 0.0042   8 0.00149 0.063 0.0601, 0.0739 0.07
129S1/SvImJ m 0.0709 0.00371   8 0.00131 0.0523 0.0635, 0.0742 -0.05
A/J f 0.0624 0.00305   8 0.00108 0.0488 0.0585, 0.0675 -0.68
A/J m 0.065 0.00254   8 0.000898 0.039 0.0625, 0.0701 -1.01
BALB/cJ f 0.0746 0.00351   8 0.00124 0.047 0.068, 0.0804 1.46
BALB/cJ m 0.08 0.00297   8 0.00105 0.0372 0.0756, 0.0837 1.44
C57BL/6J f 0.0586 0.00236   8 0.000836 0.0404 0.0546, 0.0617 -1.35
C57BL/6J m 0.0704 0.00274   8 0.000968 0.0389 0.0664, 0.0732 -0.13
DBA/2J f 0.0626 0.00886   7 0.00335 0.142 0.0482, 0.0721 -0.65
DBA/2J m 0.0631 0.00541   7 0.00204 0.0857 0.0554, 0.0682 -1.32
NOD/ShiLtJ f 0.0668 0.00298   8 0.00105 0.0446 0.0647, 0.0734 0.09
NOD/ShiLtJ m 0.0713 0.00173   8 0.000612 0.0243 0.0685, 0.0732 0.02
SJL/J f 0.0724 0.00251   8 0.000887 0.0346 0.0687, 0.0768 1.07
SJL/J m 0.0777 0.00187   8 0.000661 0.0241 0.0744, 0.08 1.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0667 0.0013 0.0693 0.0641
129S1/SvImJ m 0.0709 0.0013 0.0735 0.0682
A/J f 0.0625 0.0013 0.0651 0.0598
A/J m 0.0651 0.0013 0.0677 0.0624
BALB/cJ f 0.0746 0.0013 0.0772 0.0719
BALB/cJ m 0.08 0.0013 0.0827 0.0774
C57BL/6J f 0.0586 0.0013 0.0612 0.0559
C57BL/6J m 0.0704 0.0013 0.073 0.0677
DBA/2J f 0.0626 0.0014 0.0654 0.0598
DBA/2J m 0.0631 0.0014 0.0659 0.0603
NOD/ShiLtJ f 0.0668 0.0013 0.0695 0.0642
NOD/ShiLtJ m 0.0713 0.0013 0.0739 0.0686
SJL/J f 0.0724 0.0013 0.0751 0.0698
SJL/J m 0.0777 0.0013 0.0804 0.0751


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0688 0.0009 0.0707 0.0669
A/J both 0.0638 0.0009 0.0656 0.0619
BALB/cJ both 0.0773 0.0009 0.0792 0.0754
C57BL/6J both 0.0645 0.0009 0.0663 0.0626
DBA/2J both 0.0629 0.001 0.0649 0.0609
NOD/ShiLtJ both 0.069 0.0009 0.0709 0.0672
SJL/J both 0.0751 0.0009 0.077 0.0732




  GWAS USING LINEAR MIXED MODELS