Project measure / variable:   Jaxwest1   BMD

ID, description, units MPD:15130   BMD   bone mineral density (BMD)   [g/cm2]  
Data set, strains Jaxwest1   inbred   7 strains     sex: both     age: 11-13wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxwest1 - bone mineral density (BMD)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains7 strains
Mean of the strain means0.0496   g/cm2 0.0511   g/cm2
Median of the strain means0.0516   g/cm2 0.0530   g/cm2
SD of the strain means± 0.00315 ± 0.00354
Coefficient of variation (CV)0.0635 0.0693
Min–max range of strain means0.0445   –   0.0522   g/cm2 0.0458   –   0.0542   g/cm2
Mean sample size per strain8.0   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0001 0.0001 11.1437 0.0012
strain 6 0.001 0.0002 26.5926 < 0.0001
sex:strain 6 0.0001 0.0 1.9359 0.0826
Residuals 97 0.0006 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0522 0.00319   8 0.00113 0.0611 0.0469, 0.0573 0.83
129S1/SvImJ m 0.0542 0.00317   8 0.00112 0.0585 0.0492, 0.0581 0.87
A/J f 0.0445 0.00237   8 0.000839 0.0534 0.0407, 0.0474 -1.62
A/J m 0.0458 0.00125   8 0.000443 0.0274 0.0444, 0.0481 -1.5
BALB/cJ f 0.0516 0.0013   8 0.000461 0.0252 0.0487, 0.0525 0.64
BALB/cJ m 0.053 0.00242   8 0.000856 0.0457 0.0501, 0.0567 0.54
C57BL/6J f 0.0461 0.0017   8 0.000603 0.0369 0.0442, 0.049 -1.11
C57BL/6J m 0.0499 0.00167   8 0.000592 0.0335 0.0478, 0.0521 -0.34
DBA/2J f 0.0491 0.00469   8 0.00166 0.0957 0.0413, 0.0528 -0.16
DBA/2J m 0.047 0.00387   7 0.00146 0.0822 0.039, 0.0516 -1.16
NOD/ShiLtJ f 0.0517 0.00192   8 0.000678 0.0371 0.0494, 0.0546 0.67
NOD/ShiLtJ m 0.0541 0.00131   8 0.000464 0.0243 0.0529, 0.0561 0.85
SJL/J f 0.052 0.00202   8 0.000714 0.0388 0.0493, 0.0553 0.76
SJL/J m 0.0537 0.00104   8 0.000368 0.0194 0.0516, 0.0549 0.73


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0522 0.0009 0.054 0.0505
129S1/SvImJ m 0.0542 0.0009 0.056 0.0525
A/J f 0.0445 0.0009 0.0462 0.0428
A/J m 0.0458 0.0009 0.0475 0.044
BALB/cJ f 0.0516 0.0009 0.0534 0.0499
BALB/cJ m 0.0531 0.0009 0.0548 0.0513
C57BL/6J f 0.0461 0.0009 0.0479 0.0444
C57BL/6J m 0.0499 0.0009 0.0517 0.0482
DBA/2J f 0.0491 0.0009 0.0508 0.0473
DBA/2J m 0.047 0.0009 0.0489 0.0452
NOD/ShiLtJ f 0.0517 0.0009 0.0535 0.05
NOD/ShiLtJ m 0.0541 0.0009 0.0559 0.0524
SJL/J f 0.052 0.0009 0.0537 0.0502
SJL/J m 0.0537 0.0009 0.0554 0.0519


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0532 0.0006 0.0545 0.052
A/J both 0.0451 0.0006 0.0464 0.0439
BALB/cJ both 0.0523 0.0006 0.0536 0.0511
C57BL/6J both 0.048 0.0006 0.0493 0.0468
DBA/2J both 0.048 0.0006 0.0493 0.0468
NOD/ShiLtJ both 0.0529 0.0006 0.0542 0.0517
SJL/J both 0.0528 0.0006 0.0541 0.0516




  GWAS USING LINEAR MIXED MODELS