Project measure / variable:   Jaxwest1   fat_wt

ID, description, units MPD:15127   fat_wt   fat weight, head excluded   [g]  
Data set, strains Jaxwest1   inbred   7 strains     sex: both     age: 11-13wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxwest1 - fat weight, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains7 strains
Mean of the strain means3.37   g 4.20   g
Median of the strain means2.81   g 3.85   g
SD of the strain means± 1.03 ± 0.861
Coefficient of variation (CV)0.305 0.205
Min–max range of strain means2.37   –   4.94   g 3.28   –   5.79   g
Mean sample size per strain8.0   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 17.9917 17.9917 22.9901 < 0.0001
strain 6 78.6752 13.1125 16.7554 < 0.0001
sex:strain 6 4.7757 0.796 1.0171 0.4189
Residuals 97 75.9108 0.7826


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.74 0.312   8 0.11 0.114 2.31, 3.26 -0.61
129S1/SvImJ m 3.85 0.957   8 0.338 0.249 2.77, 5.84 -0.41
A/J f 4.94 1.02   8 0.36 0.206 3.71, 6.78 1.53
A/J m 4.94 0.619   8 0.219 0.125 4.19, 6.18 0.86
BALB/cJ f 3.27 0.712   8 0.252 0.218 2.1, 4.33 -0.1
BALB/cJ m 3.71 0.733   8 0.259 0.197 2.81, 5.16 -0.57
C57BL/6J f 2.76 0.794   8 0.281 0.288 1.92, 4.19 -0.59
C57BL/6J m 3.99 1.08   8 0.382 0.271 2.99, 5.96 -0.25
DBA/2J f 4.7 1.59   8 0.561 0.338 2.96, 7.78 1.3
DBA/2J m 5.79 1.35   7 0.51 0.233 4.41, 8.38 1.84
NOD/ShiLtJ f 2.81 0.549   8 0.194 0.195 1.76, 3.78 -0.55
NOD/ShiLtJ m 3.85 0.686   8 0.243 0.178 2.56, 4.92 -0.41
SJL/J f 2.37 0.355   8 0.126 0.15 1.66, 2.77 -0.97
SJL/J m 3.28 0.775   8 0.274 0.237 2.39, 4.34 -1.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.74 0.3128 3.3608 2.1192
129S1/SvImJ m 3.85 0.3128 4.4708 3.2292
A/J f 4.935 0.3128 5.5558 4.3142
A/J m 4.9375 0.3128 5.5583 4.3167
BALB/cJ f 3.2688 0.3128 3.8895 2.648
BALB/cJ m 3.7138 0.3128 4.3345 3.093
C57BL/6J f 2.7563 0.3128 3.377 2.1355
C57BL/6J m 3.9938 0.3128 4.6145 3.373
DBA/2J f 4.695 0.3128 5.3158 4.0742
DBA/2J m 5.79 0.3344 6.4536 5.1264
NOD/ShiLtJ f 2.8113 0.3128 3.432 2.1905
NOD/ShiLtJ m 3.8537 0.3128 4.4745 3.233
SJL/J f 2.3687 0.3128 2.9895 1.748
SJL/J m 3.275 0.3128 3.8958 2.6542


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.295 0.2212 3.7339 2.8561
A/J both 4.9362 0.2212 5.3752 4.4973
BALB/cJ both 3.4913 0.2212 3.9302 3.0523
C57BL/6J both 3.375 0.2212 3.8139 2.9361
DBA/2J both 5.2425 0.2289 5.6968 4.7882
NOD/ShiLtJ both 3.3325 0.2212 3.7714 2.8936
SJL/J both 2.8219 0.2212 3.2608 2.3829




  GWAS USING LINEAR MIXED MODELS