Project measure / variable:   Jaxwest1   HP_response

ID, description, units MPD:15124   HP_response   hot plate test, hindpaw response (0=flick; 1=lick)   [score]  
Data set, strains Jaxwest1   inbred   7 strains     sex: both     age: 9-12wks
Procedure nociception assay
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  STRAIN COMPARISON PLOT
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Jaxwest1 - hot plate test, hindpaw response (0=flick; 1=lick)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains7 strains
Mean of the strain means0.625   score 0.643   score
Median of the strain means0.625   score 0.625   score
SD of the strain means± 0.354 ± 0.334
Coefficient of variation (CV)0.566 0.520
Min–max range of strain means0.125   –   1.00   score 0.125   –   1.00   score
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0089 0.0089 0.0598 0.8073
strain 6 10.8036 1.8006 12.0655 < 0.0001
sex:strain 6 0.5536 0.0923 0.6182 0.7152
Residuals 98 14.625 0.1492


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.0 0.0   8 0.0 0.0 1.0, 1.0 1.06
129S1/SvImJ m 1.0 0.0   8 0.0 0.0 1.0, 1.0 1.07
A/J f 0.5 0.535   8 0.189 1.07 -0.35
A/J m 0.625 0.518   8 0.183 0.828 -0.05
BALB/cJ f 0.625 0.518   8 0.183 0.828 0.0
BALB/cJ m 0.375 0.518   8 0.183 1.38 -0.8
C57BL/6J f 0.875 0.354   8 0.125 0.404 0.71
C57BL/6J m 0.875 0.354   8 0.125 0.404 0.69
DBA/2J f 0.125 0.354   8 0.125 2.83 -1.41
DBA/2J m 0.125 0.354   8 0.125 2.83 -1.55
NOD/ShiLtJ f 0.25 0.463   8 0.164 1.85 -1.06
NOD/ShiLtJ m 0.5 0.535   8 0.189 1.07 -0.43
SJL/J f 1.0 0.0   8 0.0 0.0 1.0, 1.0 1.06
SJL/J m 1.0 0.0   8 0.0 0.0 1.0, 1.0 1.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.0 0.1366 1.271 0.729
129S1/SvImJ m 1.0 0.1366 1.271 0.729
A/J f 0.5 0.1366 0.771 0.229
A/J m 0.625 0.1366 0.896 0.354
BALB/cJ f 0.625 0.1366 0.896 0.354
BALB/cJ m 0.375 0.1366 0.646 0.104
C57BL/6J f 0.875 0.1366 1.146 0.604
C57BL/6J m 0.875 0.1366 1.146 0.604
DBA/2J f 0.125 0.1366 0.396 0.0
DBA/2J m 0.125 0.1366 0.396 0.0
NOD/ShiLtJ f 0.25 0.1366 0.521 0.0
NOD/ShiLtJ m 0.5 0.1366 0.771 0.229
SJL/J f 1.0 0.1366 1.271 0.729
SJL/J m 1.0 0.1366 1.271 0.729


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.0 0.0966 1.1917 0.8083
A/J both 0.5625 0.0966 0.7542 0.3708
BALB/cJ both 0.5 0.0966 0.6917 0.3083
C57BL/6J both 0.875 0.0966 1.0667 0.6833
DBA/2J both 0.125 0.0966 0.3167 0.0
NOD/ShiLtJ both 0.375 0.0966 0.5667 0.1833
SJL/J both 1.0 0.0966 1.1917 0.8083




  GWAS USING LINEAR MIXED MODELS