Project measure / variable:   Richfield1   vert_short_habit

ID, description, units MPD:14521   vert_short_habit   short-term habituation, change in vertical activity over 45 min, day 3   [n/min]  
Data set, strains Richfield1   inbred   15 strains     sex: m     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Richfield1 - short-term habituation, change in vertical activity over 45 min, day 3



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested15 strains
Mean of the strain means-0.144   n/min
Median of the strain means-0.132   n/min
SD of the strain means± 0.402
Coefficient of variation (CV)-2.78
Min–max range of strain means-1.03   –   0.396   n/min
Mean sample size per strain6.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 14 12.7582 0.9113 7.8096 < 0.0001
Residuals 89 10.3854 0.1167


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m -0.00167 0.0496   6 0.0202 -29.7 -0.04, 0.09 0.36
A/HeJ m 0.271 0.395   10 0.125 1.46 -0.3, 1.08 1.03
A/J m 0.223 0.265   4 0.133 1.19 -0.04, 0.59 0.91
AKR/J m -0.148 0.374   4 0.187 -2.53 -0.64, 0.21 -0.01
B10.D2-Hc0 m 0.187 0.28   3 0.162 1.5 -0.12, 0.43 0.82
BALB/cByJ m 0.396 0.387   5 0.173 0.978 0.01, 0.99 1.34
BALB/cJ m 0.323 0.707   3 0.408 2.19 -0.1, 1.14 1.16
C3H/HeJ m -1.03 0.505   5 0.226 -0.493 -1.67, -0.47 -2.2
C57BL/6J m -0.107 0.385   16 0.0961 -3.58 -0.9, 0.46 0.09
CAST/EiJ m -0.372 0.301   10 0.0952 -0.809 -0.8, 0.14 -0.57
DBA/2J m -0.212 0.222   5 0.0994 -1.05 -0.41, 0.13 -0.17
MRL/MpJ m -0.564 0.327   5 0.146 -0.58 -0.99, -0.22 -1.04
NZB/BlNJ m -0.352 0.207   10 0.0653 -0.587 -0.78, -0.06 -0.52
NZW/LacJ m -0.648 0.394   9 0.131 -0.609 -1.38, -0.09 -1.25
SPRET/EiJ m -0.132 0.186   9 0.062 -1.41 -0.43, 0.16 0.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m -0.0017 0.1395 0.2754 -0.2788
A/HeJ m 0.271 0.108 0.4856 0.0564
A/J m 0.2225 0.1708 0.5619 -0.1169
AKR/J m -0.1475 0.1708 0.1919 -0.4869
B10.D2-Hc0 m 0.1867 0.1972 0.5785 -0.2052
BALB/cByJ m 0.396 0.1528 0.6995 0.0925
BALB/cJ m 0.3233 0.1972 0.7152 -0.0685
C3H/HeJ m -1.026 0.1528 -0.7225 -1.3295
C57BL/6J m -0.1075 0.0854 0.0622 -0.2772
CAST/EiJ m -0.372 0.108 -0.1574 -0.5866
DBA/2J m -0.212 0.1528 0.0915 -0.5155
MRL/MpJ m -0.564 0.1528 -0.2605 -0.8675
NZB/BlNJ m -0.352 0.108 -0.1374 -0.5666
NZW/LacJ m -0.6478 0.1139 -0.4215 -0.874
SPRET/EiJ m -0.1322 0.1139 0.094 -0.3585




  GWAS USING LINEAR MIXED MODELS