Phenotype measure:   Richfield1   vert_long_habit

ID, description, units MPD:14520   vert_long_habit   long-term habituation, change in vertical activity over days 1-3   [n/d]
Data set, strains Richfield1   inbred   15 strains     sex: m     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Richfield1 - long-term habituation, change in vertical activity over days 1-3



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested15 strains
Mean of the strain means1.59   n/d
Median of the strain means-2.50   n/d
SD of the strain means± 38.5
Coefficient of variation (CV)24.2
Min–max range of strain means-59.0   –   70.5   n/d
Mean sample size per strain6.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 14 162775.3233 11626.8088 2.3555 0.008
Residuals 89 439300.3306 4935.9588


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m -12.2 20.9   6 8.53 -1.72 -42.5, 14.0 -0.36
A/HeJ m 58.8 79.8   10 25.2 1.36 -31.0, 184.0 1.49
A/J m 70.5 72.4   4 36.2 1.03 -7.5, 162.0 1.79
AKR/J m 10.8 55.7   4 27.9 5.18 -37.5, 79.5 0.24
B10.D2-Hc0 m -0.5 69.1   3 39.9 -138.0 -80.0, 45.5 -0.05
BALB/cByJ m 30.9 138.0   5 61.6 4.45 -97.5, 259.0 0.76
BALB/cJ m -22.5 78.5   3 45.3 -3.49 -95.5, 60.5 -0.63
C3H/HeJ m 54.1 33.0   5 14.8 0.61 20.0, 99.5 1.36
C57BL/6J m -59.0 86.0   16 21.5 -1.46 -220.0, 95.5 -1.57
CAST/EiJ m 15.9 95.0   10 30.0 5.98 -70.5, 252.0 0.37
DBA/2J m -2.5 47.0   5 21.0 -18.8 -59.0, 51.0 -0.11
MRL/MpJ m -35.5 86.7   5 38.8 -2.44 -118.0, 111.0 -0.96
NZB/BlNJ m -22.2 27.5   10 8.7 -1.24 -59.5, 20.5 -0.62
NZW/LacJ m -41.7 40.9   9 13.6 -0.982 -108.0, 7.5 -1.13
SPRET/EiJ m -21.1 13.7   9 4.57 -0.651 -41.0, 3.5 -0.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m -12.1667 28.682 44.8239 -69.1573
A/HeJ m 58.8 22.217 102.9447 14.6553
A/J m 70.5 35.1282 140.299 0.701
AKR/J m 10.75 35.1282 80.549 -59.049
B10.D2-Hc0 m -0.5 40.5625 80.0969 -81.0969
BALB/cByJ m 30.9 31.4196 93.3301 -31.5301
BALB/cJ m -22.5 40.5625 58.0969 -103.0969
C3H/HeJ m 54.1 31.4196 116.5301 -8.3301
C57BL/6J m -59.0 17.5641 -24.1005 -93.8995
CAST/EiJ m 15.9 22.217 60.0447 -28.2447
DBA/2J m -2.5 31.4196 59.9301 -64.9301
MRL/MpJ m -35.5 31.4196 26.9301 -97.9301
NZB/BlNJ m -22.25 22.217 21.8947 -66.3947
NZW/LacJ m -41.6667 23.4188 4.866 -88.1993
SPRET/EiJ m -21.0556 23.4188 25.4771 -67.5882




  GWAS USING LINEAR MIXED MODELS