Phenotype measure:   Richfield1   amb_short_habit

ID, description, units MPD:14517   amb_short_habit   short-term habituation, change in ambulatory activity over 45 min, day 3   [n/min]
Data set, strains Richfield1   inbred   15 strains     sex: m     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Richfield1 - short-term habituation, change in ambulatory activity over 45 min, day 3



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested15 strains
Mean of the strain means-3.52   n/min
Median of the strain means-4.00   n/min
SD of the strain means± 3.54
Coefficient of variation (CV)-1.01
Min–max range of strain means-8.86   –   2.86   n/min
Mean sample size per strain10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 14 1755.391 125.3851 9.713 < 0.0001
Residuals 144 1858.8877 12.9089


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m -1.02 0.989   10 0.313 -0.969 -2.86, 0.76 0.71
A/HeJ m 0.265 1.75   10 0.553 6.6 -3.03, 3.24 1.07
A/J m -0.136 1.74   10 0.551 -12.8 -3.66, 2.28 0.96
AKR/J m -5.9 3.85   10 1.22 -0.652 -12.4, 1.14 -0.67
B10.D2-Hc0 m -3.02 3.44   10 1.09 -1.14 -11.0, 0.58 0.14
BALB/cByJ m 2.86 4.18   10 1.32 1.46 -4.05, 9.79 1.8
BALB/cJ m 0.79 3.63   10 1.15 4.6 -5.62, 6.12 1.22
C3H/HeJ m -7.34 3.53   10 1.12 -0.481 -14.3, -2.11 -1.08
C57BL/6J m -4.42 5.12   20 1.15 -1.16 -16.2, 3.44 -0.25
CAST/EiJ m -7.53 3.44   10 1.09 -0.458 -13.4, -0.48 -1.13
DBA/2J m -4.0 3.15   10 0.997 -0.789 -9.4, 0.43 -0.14
MRL/MpJ m -5.83 3.52   10 1.11 -0.603 -10.5, -1.22 -0.65
NZB/BlNJ m -6.67 2.7   10 0.853 -0.404 -11.1, -2.22 -0.89
NZW/LacJ m -8.86 5.25   10 1.66 -0.592 -19.5, -2.04 -1.51
SPRET/EiJ m -1.97 2.45   9 0.815 -1.24 -5.15, 3.31 0.44


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m -1.02 1.1362 1.2257 -3.2657
A/HeJ m 0.265 1.1362 2.5107 -1.9807
A/J m -0.136 1.1362 2.1097 -2.3817
AKR/J m -5.901 1.1362 -3.6553 -8.1467
B10.D2-Hc0 m -3.018 1.1362 -0.7723 -5.2637
BALB/cByJ m 2.857 1.1362 5.1027 0.6113
BALB/cJ m 0.79 1.1362 3.0357 -1.4557
C3H/HeJ m -7.34 1.1362 -5.0943 -9.5857
C57BL/6J m -4.4175 0.8034 -2.8295 -6.0055
CAST/EiJ m -7.525 1.1362 -5.2793 -9.7707
DBA/2J m -3.996 1.1362 -1.7503 -6.2417
MRL/MpJ m -5.829 1.1362 -3.5833 -8.0747
NZB/BlNJ m -6.668 1.1362 -4.4223 -8.9137
NZW/LacJ m -8.862 1.1362 -6.6163 -11.1077
SPRET/EiJ m -1.9689 1.1976 0.3983 -4.3361




  GWAS USING LINEAR MIXED MODELS