Project measure / variable:   Richfield1   amb2

ID, description, units MPD:14505   amb2   ambulatory activity counts, 45 min test   [n]  day2  
Data set, strains Richfield1   inbred   15 strains     sex: m     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Richfield1 - ambulatory activity counts, 45 min test day2



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested15 strains
Mean of the strain means3649   n
Median of the strain means3220   n
SD of the strain means± 2247
Coefficient of variation (CV)0.616
Min–max range of strain means1005   –   8302   n
Mean sample size per strain10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 14 901133680.8396 64366691.4885 27.9473 < 0.0001
Residuals 144 331653313.5 2303148.0104


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1005.0 663.0   10 210.0 0.66 15.0, 1969.0 -1.18
A/HeJ m 2222.0 1032.0   10 326.0 0.464 898.0, 3755.0 -0.64
A/J m 1612.0 862.0   10 273.0 0.535 682.0, 3537.0 -0.91
AKR/J m 5636.0 2074.0   10 656.0 0.368 1436.0, 7914.0 0.88
B10.D2-Hc0 m 7253.0 1254.0   10 396.0 0.173 5490.0, 8673.0 1.6
BALB/cByJ m 4959.0 2700.0   10 854.0 0.544 1901.0, 11550.0 0.58
BALB/cJ m 2593.0 1568.0   10 496.0 0.605 126.0, 5767.0 -0.47
C3H/HeJ m 3220.0 1000.0   10 316.0 0.31 1556.0, 4601.0 -0.19
C57BL/6J m 8302.0 1843.0   20 412.0 0.222 5020.0, 12597.0 2.07
CAST/EiJ m 5241.0 1223.0   10 387.0 0.233 2695.0, 7115.0 0.71
DBA/2J m 2477.0 1051.0   10 332.0 0.424 899.0, 3960.0 -0.52
MRL/MpJ m 4217.0 2430.0   10 769.0 0.576 1310.0, 7818.0 0.25
NZB/BlNJ m 1452.0 786.0   10 249.0 0.541 277.0, 2670.0 -0.98
NZW/LacJ m 3502.0 985.0   10 312.0 0.281 1991.0, 4677.0 -0.07
SPRET/EiJ m 1040.0 902.0   9 301.0 0.867 369.0, 3206.0 -1.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 1004.9 479.9112 1953.4806 56.3194
A/HeJ m 2222.5 479.9112 3171.0806 1273.9194
A/J m 1611.6 479.9112 2560.1806 663.0194
AKR/J m 5635.9 479.9112 6584.4806 4687.3194
B10.D2-Hc0 m 7252.6 479.9112 8201.1806 6304.0194
BALB/cByJ m 4958.7 479.9112 5907.2806 4010.1194
BALB/cJ m 2593.4 479.9112 3541.9806 1644.8194
C3H/HeJ m 3219.8 479.9112 4168.3806 2271.2194
C57BL/6J m 8302.2 339.3485 8972.9478 7631.4522
CAST/EiJ m 5240.7 479.9112 6189.2806 4292.1194
DBA/2J m 2476.8 479.9112 3425.3806 1528.2194
MRL/MpJ m 4216.6 479.9112 5165.1806 3268.0194
NZB/BlNJ m 1452.5 479.9112 2401.0806 503.9194
NZW/LacJ m 3502.5 479.9112 4451.0806 2553.9194
SPRET/EiJ m 1040.3333 505.8709 2040.2251 40.4416




  GWAS USING LINEAR MIXED MODELS