Project measure / variable:   Naggert1   pctfat_fat8

ID, description, units MPD:14319   pctfat_fat8   percentage of tissue mass that is fat, head excluded   [%]  
high-fat diet study
Data set, strains Naggert1   inbred w/CC7   41 strains     sex: both     age: 15-17wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Naggert1 - percentage of tissue mass that is fat, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested39 strains38 strains
Mean of the strain means23.3   % 23.3   %
Median of the strain means22.9   % 22.6   %
SD of the strain means± 5.76 ± 6.92
Coefficient of variation (CV)0.247 0.296
Min–max range of strain means13.7   –   37.1   % 10.8   –   40.0   %
Mean sample size per strain9.8   mice 9.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.9793 3.9793 0.2208 0.6386
strain 35 26194.1192 748.4034 41.5223 < 0.0001
sex:strain 35 4642.9884 132.6568 7.36 < 0.0001
Residuals 638 11499.3891 18.0241


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 23.7 2.05   8 0.725 0.0863 20.5, 27.2 0.06
129S1/SvImJ m 32.8 3.41   10 1.08 0.104 26.6, 36.6 1.37
A/J f 25.8 2.62   10 0.828 0.101 22.4, 30.7 0.43
A/J m 22.6 4.09   10 1.29 0.181 17.5, 32.1 -0.11
AKR/J f 37.1 6.36   18 1.5 0.172 23.6, 47.0 2.39
AKR/J m 36.1 3.96   17 0.962 0.11 29.4, 45.9 1.85
BALB/cByJ m 19.7 2.88   9 0.961 0.147 16.4, 24.4 -0.53
BALB/cJ f 25.4 2.57   9 0.856 0.101 21.3, 28.6 0.36
BALB/cJ m 18.9 3.06   10 0.969 0.162 14.2, 23.8 -0.64
BTBR T+ Itpr3tf/J f 25.0 3.15   10 0.995 0.126 19.7, 29.0 0.29
BTBR T+ Itpr3tf/J m 30.4 4.56   10 1.44 0.15 22.8, 37.8 1.02
BUB/BnJ f 18.5 5.13   12 1.48 0.277 11.0, 29.1 -0.84
BUB/BnJ m 21.0 2.66   8 0.942 0.127 17.2, 25.0 -0.34
C3H/HeJ f 22.6 4.84   10 1.53 0.214 16.5, 29.3 -0.13
C3H/HeJ m 28.4 4.74   10 1.5 0.167 22.9, 37.1 0.73
C57BL/10J f 17.5 2.79   9 0.93 0.159 14.9, 24.2 -1.01
C57BL/10J m 21.7 3.0   12 0.866 0.138 18.2, 28.5 -0.24
C57BL/6J f 17.2 2.24   10 0.709 0.131 14.8, 22.4 -1.06
C57BL/6J m 13.3 0.946   10 0.299 0.071 12.2, 14.9 -1.45
C57BLKS/J f 22.9 3.63   12 1.05 0.159 16.7, 28.8 -0.07
C57BLKS/J m 23.4 2.8   10 0.886 0.12 19.5, 28.1 0.01
C57BR/cdJ f 17.7 3.02   12 0.872 0.171 14.1, 23.9 -0.98
C57BR/cdJ m 25.3 5.01   10 1.58 0.198 16.5, 31.6 0.28
C57L/J f 17.4 4.39   10 1.39 0.253 12.9, 26.1 -1.03
C57L/J m 19.8 4.36   10 1.38 0.22 12.9, 25.2 -0.51
C58/J f 15.4 1.19   11 0.36 0.0776 13.8, 17.3 -1.38
C58/J m 14.2 1.9   9 0.634 0.134 12.0, 16.6 -1.32
CAST/EiJ f 17.8 2.96   9 0.987 0.167 14.4, 23.8 -0.96
CAST/EiJ m 17.2 5.01   8 1.77 0.291 11.2, 24.3 -0.89
CBA/J f 34.1 4.2   10 1.33 0.123 26.9, 40.3 1.87
CBA/J m 32.1 3.6   8 1.27 0.112 27.4, 37.8 1.27
CZECHII/EiJ f 15.8 4.77   16 1.19 0.301 10.1, 30.3 -1.31
CZECHII/EiJ m 17.6 2.68   11 0.807 0.152 13.5, 21.3 -0.83
DBA/1J f 22.1 3.11   12 0.897 0.14 18.1, 26.6 -0.21
DBA/1J m 22.5 4.55   7 1.72 0.202 16.7, 28.7 -0.12
DBA/2J f 23.6 3.55   9 1.18 0.151 17.2, 27.6 0.05
DBA/2J m 29.1 4.3   9 1.43 0.148 23.9, 36.1 0.83
FVB/NJ f 26.5 3.45   9 1.15 0.13 21.6, 32.0 0.55
FVB/NJ m 18.1 2.3   10 0.728 0.128 14.9, 22.8 -0.76
I/LnJ f 22.9 3.25   9 1.08 0.142 18.5, 28.5 -0.07
I/LnJ m 19.0 2.68   12 0.774 0.141 15.4, 23.8 -0.63
JF1/MsJ f 32.4 6.31   10 2.0 0.195 20.9, 44.3 1.57
JF1/MsJ m 31.7 5.25   7 1.98 0.165 22.4, 36.4 1.21
KK/HlJ f 22.6 9.99   8 3.53 0.442 16.5, 45.9 -0.13
KK/HlJ m 40.0 5.33   9 1.78 0.133 32.0, 46.3 2.41
LP/J f 30.0 4.73   9 1.58 0.158 23.9, 36.9 1.16
LP/J m 34.6 6.43   9 2.14 0.186 22.2, 42.5 1.63
MA/MyJ f 24.6 5.37   9 1.79 0.218 19.2, 33.6 0.22
MA/MyJ m 22.6 5.05   10 1.6 0.224 15.1, 30.7 -0.11
MOLF/EiJ f 13.7 3.12   7 1.18 0.228 9.71, 17.2 -1.67
MOLF/EiJ m 13.7 1.88   7 0.712 0.138 12.0, 17.5 -1.39
MSM/MsJ f 23.6 2.82   8 0.999 0.12 18.9, 27.7 0.05
MSM/MsJ m 29.3 6.66   12 1.92 0.227 16.9, 36.2 0.86
NOD/ShiLtJ f 21.4 4.84   15 1.25 0.226 16.0, 32.0 -0.33
NOD/ShiLtJ m 19.5 4.53   8 1.6 0.232 13.8, 29.1 -0.55
NON/ShiLtJ f 32.3 5.36   10 1.7 0.166 22.2, 39.3 1.56
NON/ShiLtJ m 25.2 2.58   10 0.817 0.103 21.7, 28.3 0.27
NZB/BlNJ m 25.3 5.92   10 1.87 0.234 15.0, 32.8 0.28
NZW/LacJ f 31.5 3.97   10 1.25 0.126 23.7, 36.5 1.42
NZW/LacJ m 26.8 5.97   10 1.89 0.223 16.6, 33.2 0.5
PERA/EiJ f 31.1 4.47   9 1.49 0.144 22.7, 37.4 1.35
PERA/EiJ m 24.5 6.26   9 2.09 0.256 18.8, 36.8 0.17
PL/J f 21.9 1.29   10 0.408 0.0589 19.8, 23.3 -0.25
PWK/PhJ f 21.9 3.74   7 1.41 0.171 14.8, 26.2 -0.25
RIIIS/J f 22.0 3.03   9 1.01 0.138 18.0, 26.4 -0.23
SEA/GnJ f 28.3 4.73   9 1.58 0.167 23.2, 37.9 0.86
SEA/GnJ m 26.7 1.9   10 0.601 0.0711 24.1, 30.3 0.49
SJL/J f 23.0 3.39   9 1.13 0.148 18.2, 29.2 -0.06
SJL/J m 22.7 4.6   15 1.19 0.202 17.3, 32.6 -0.09
SM/J f 25.9 3.16   9 1.05 0.122 20.9, 30.6 0.45
SM/J m 21.3 6.39   9 2.13 0.299 12.6, 32.3 -0.29
SPRET/EiJ f 24.8 8.24   4 4.12 0.332 16.0, 34.3 0.26
SPRET/EiJ m 14.2 2.84   6 1.16 0.2 9.13, 16.1 -1.32
SWR/J f 16.1 1.94   10 0.614 0.121 13.7, 20.0 -1.25
SWR/J m 14.6 3.13   10 0.989 0.214 11.3, 20.4 -1.26
WSB/EiJ f 13.7 2.81   8 0.994 0.205 10.5, 19.5 -1.67
WSB/EiJ m 10.8 1.3   9 0.435 0.12 9.24, 12.5 -1.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 23.7375 1.501 26.685 20.79
129S1/SvImJ m 32.77 1.3425 35.4063 30.1337
A/J f 25.84 1.3425 28.4763 23.2037
A/J m 22.65 1.3425 25.2863 20.0137
AKR/J f 37.0556 1.0007 39.0206 35.0906
AKR/J m 36.0882 1.0297 38.1102 34.0663
BALB/cJ f 25.3889 1.4152 28.1678 22.61
BALB/cJ m 18.89 1.3425 21.5263 16.2537
BTBR T+ Itpr3tf/J f 25.02 1.3425 27.6563 22.3837
BTBR T+ Itpr3tf/J m 30.36 1.3425 32.9963 27.7237
BUB/BnJ f 18.5083 1.2256 20.915 16.1017
BUB/BnJ m 20.9875 1.501 23.935 18.04
C3H/HeJ f 22.64 1.3425 25.2763 20.0037
C3H/HeJ m 28.45 1.3425 31.0863 25.8137
C57BL/10J f 17.5 1.4152 20.2789 14.7211
C57BL/10J m 21.6833 1.2256 24.09 19.2767
C57BL/6J f 17.16 1.3425 19.7963 14.5237
C57BL/6J m 13.32 1.3425 15.9563 10.6837
C57BLKS/J f 22.9083 1.2256 25.315 20.5017
C57BLKS/J m 23.44 1.3425 26.0763 20.8037
C57BR/cdJ f 17.675 1.2256 20.0816 15.2684
C57BR/cdJ m 25.3 1.3425 27.9363 22.6637
C57L/J f 17.39 1.3425 20.0263 14.7537
C57L/J m 19.76 1.3425 22.3963 17.1237
C58/J f 15.3727 1.2801 17.8864 12.8591
C58/J m 14.2111 1.4152 16.99 11.4322
CAST/EiJ f 17.7778 1.4152 20.5567 14.9988
CAST/EiJ m 17.2 1.501 20.1475 14.2525
CBA/J f 34.09 1.3425 36.7263 31.4537
CBA/J m 32.075 1.501 35.0225 29.1275
CZECHII/EiJ f 15.8313 1.0614 17.9155 13.747
CZECHII/EiJ m 17.6364 1.2801 20.15 15.1227
DBA/1J f 22.125 1.2256 24.5316 19.7184
DBA/1J m 22.5286 1.6046 25.6796 19.3776
DBA/2J f 23.5889 1.4152 26.3678 20.81
DBA/2J m 29.0889 1.4152 31.8678 26.31
FVB/NJ f 26.5111 1.4152 29.29 23.7322
FVB/NJ m 18.05 1.3425 20.6863 15.4137
I/LnJ f 22.9111 1.4152 25.69 20.1322
I/LnJ m 18.9667 1.2256 21.3733 16.56
JF1/MsJ f 32.42 1.3425 35.0563 29.7837
JF1/MsJ m 31.7143 1.6046 34.8653 28.5633
KK/HlJ f 22.575 1.501 25.5225 19.6275
KK/HlJ m 40.0 1.4152 42.7789 37.2211
LP/J f 29.9667 1.4152 32.7456 27.1877
LP/J m 34.6333 1.4152 37.4123 31.8544
MA/MyJ f 24.6333 1.4152 27.4123 21.8544
MA/MyJ m 22.59 1.3425 25.2263 19.9537
MOLF/EiJ f 13.7057 1.6046 16.8567 10.5547
MOLF/EiJ m 13.7 1.6046 16.851 10.549
MSM/MsJ f 23.6 1.501 26.5475 20.6525
MSM/MsJ m 29.3 1.2256 31.7066 26.8934
NOD/ShiLtJ f 21.3933 1.0962 23.5459 19.2408
NOD/ShiLtJ m 19.525 1.501 22.4725 16.5775
NON/ShiLtJ f 32.3 1.3425 34.9363 29.6637
NON/ShiLtJ m 25.2 1.3425 27.8363 22.5637
NZW/LacJ f 31.48 1.3425 34.1163 28.8437
NZW/LacJ m 26.8 1.3425 29.4363 24.1637
PERA/EiJ f 31.1222 1.4152 33.9012 28.3433
PERA/EiJ m 24.4667 1.4152 27.2456 21.6877
SEA/GnJ f 28.3444 1.4152 31.1234 25.5655
SEA/GnJ m 26.72 1.3425 29.3563 24.0837
SJL/J f 22.9667 1.4152 25.7456 20.1877
SJL/J m 22.7467 1.0962 24.8992 20.5941
SM/J f 25.9111 1.4152 28.69 23.1322
SM/J m 21.3222 1.4152 24.1012 18.5433
SPRET/EiJ f 24.85 2.1227 29.0184 20.6816
SPRET/EiJ m 14.205 1.7332 17.6085 10.8015
SWR/J f 16.1 1.3425 18.7363 13.4637
SWR/J m 14.61 1.3425 17.2463 11.9737
WSB/EiJ f 13.725 1.501 16.6725 10.7775
WSB/EiJ m 10.83 1.4152 13.6089 8.0511


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 28.2538 1.0069 30.231 26.2765
A/J both 24.245 0.9493 26.1092 22.3808
AKR/J both 36.5719 0.7179 37.9816 35.1621
BALB/cJ both 22.1394 0.9753 24.0547 20.2242
BTBR T+ Itpr3tf/J both 27.69 0.9493 29.5542 25.8258
BUB/BnJ both 19.7479 0.9689 21.6505 17.8453
C3H/HeJ both 25.545 0.9493 27.4092 23.6808
C57BL/10J both 19.5917 0.936 21.4298 17.7536
C57BL/6J both 15.24 0.9493 17.1042 13.3758
C57BLKS/J both 23.1742 0.9089 24.959 21.3894
C57BR/cdJ both 21.4875 0.9089 23.2723 19.7027
C57L/J both 18.575 0.9493 20.4392 16.7108
C58/J both 14.7919 0.9541 16.6655 12.9184
CAST/EiJ both 17.4889 1.0315 19.5144 15.4634
CBA/J both 33.0825 1.0069 35.0597 31.1053
CZECHII/EiJ both 16.7338 0.8314 18.3665 15.1011
DBA/1J both 22.3268 1.0096 24.3093 20.3443
DBA/2J both 26.3389 1.0007 28.3039 24.3739
FVB/NJ both 22.2806 0.9753 24.1958 20.3653
I/LnJ both 20.9389 0.936 22.777 19.1008
JF1/MsJ both 32.0671 1.0461 34.1214 30.0129
KK/HlJ both 31.2875 1.0315 33.313 29.262
LP/J both 32.3 1.0007 34.265 30.335
MA/MyJ both 23.6117 0.9753 25.5269 21.6964
MOLF/EiJ both 13.7029 1.1347 15.931 11.4748
MSM/MsJ both 26.45 0.9689 28.3526 24.5474
NOD/ShiLtJ both 20.4592 0.9293 22.2841 18.6342
NON/ShiLtJ both 28.75 0.9493 30.6142 26.8858
NZW/LacJ both 29.14 0.9493 31.0042 27.2758
PERA/EiJ both 27.7944 1.0007 29.7594 25.8294
SEA/GnJ both 27.5322 0.9753 29.4475 25.617
SJL/J both 22.8567 0.895 24.6142 21.0991
SM/J both 23.6167 1.0007 25.5817 21.6517
SPRET/EiJ both 19.5275 1.3702 22.2182 16.8368
SWR/J both 15.355 0.9493 17.2192 13.4908
WSB/EiJ both 12.2775 1.0315 14.303 10.252




  GWAS USING LINEAR MIXED MODELS