Phenotype measure:   Jones1   threshold

ID, description, units MPD:14201   threshold   threshold stimulus response level (dB re: 1.0 g/ms)   [dB]
Data set, strains Jones1   inbred   13 strains     sex: both     age: 5-56wks
Procedure vestibular stimulus test
Ontology mappings

  STRAIN COMPARISON PLOT
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Jones1 - threshold stimulus response level (dB re: 1.0 g/ms)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains13 strains
Mean of the strain means-3.29   dB -3.93   dB
Median of the strain means-3.00   dB -4.50   dB
SD of the strain means± 2.61 ± 2.92
Coefficient of variation (CV)-0.794 -0.742
Min–max range of strain means-7.50   –   0.750   dB -7.50   –   0.750   dB
Mean sample size per strain2.9   mice 3.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 33.0464 33.0464 3.7157 0.0595
strain 9 393.3476 43.7053 4.9142 0.0001
sex:strain 9 114.1488 12.6832 1.4261 0.2019
Residuals 51 453.5769 8.8937


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/HeJ m -2.5 3.46   3 2.0 -1.39 -4.5, 1.5 0.49
A/WySnJ f -3.0 3.0   4 1.5 -1.0 -4.5, 1.5 0.11
A/WySnJ m -1.5 0.0   2   0.0 0.0 -1.5, -1.5 0.83
BALB/cByJ m -6.5 1.73   3 1.0 -0.266 -7.5, -4.5 -0.88
BUB/BnJ f -3.0 3.0   4 1.5 -1.0 -7.5, -1.5 0.11
C3H/HeSnJ f -6.5 4.58   3 2.65 -0.705 -10.5, -1.5 -1.23
C3H/HeSnJ m -7.5 4.24   2   3.0 -0.566 -10.5, -4.5 -1.22
C57BL/6J f -4.5 3.67   5 1.64 -0.816 -10.5, -1.5 -0.46
C57BL/6J m -7.38 2.9   13 0.805 -0.393 -15.0, -4.5 -1.18
CAST/EiJ f -4.5 3.46   4 1.73 -0.77 -7.5, -1.5 -0.46
CBA/J f -6.0 2.12   2   1.5 -0.354 -7.5, -4.5 -1.04
CBA/J m -7.5 0.0   2   0.0 0.0 -7.5, -7.5 -1.22
DBA/1LacJ f -1.5 0.0   2   0.0 0.0 -1.5, -1.5 0.69
DBA/1LacJ m -1.5 0.0   2   0.0 0.0 -1.5, -1.5 0.83
DBA/2J f -2.5 4.58   3 2.65 -1.83 -7.5, 1.5 0.3
DBA/2J m -2.5 3.63   6 1.48 -1.45 -7.5, 1.5 0.49
JF1/MsJ f 0.0 2.12   2   1.5 0.0 -1.5, 1.5 1.26
LP/J f 0.75 1.5   4 0.75 2.0 -1.5, 1.5 1.55
LP/J m -6.0 1.73   4 0.866 -0.289 -7.5, -4.5 -0.71
MRL/MpJ m 0.0 1.73   4 0.866 0.0 -1.5, 1.5 1.35
NOD/ShiLtJ f 0.0 2.12   2   1.5 0.0 -1.5, 1.5 1.26
NOD/ShiLtJ m 0.75 1.5   4 0.75 2.0 -1.5, 1.5 1.6
SJL/J f -4.5 4.24   2   3.0 -0.943 -7.5, -1.5 -0.46
SJL/J m -4.5 3.46   4 1.73 -0.77 -7.5, -1.5 -0.19
SKH2/J f -7.5 0.0   2   0.0 0.0 -7.5, -7.5 -1.61
SKH2/J m -4.5 3.0   3 1.73 -0.667 -7.5, -1.5 -0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/WySnJ f -3.0 1.4911 -0.0065 -5.9935
A/WySnJ m -1.5 2.1088 2.7335 -5.7335
C3H/HeSnJ f -6.5 1.7218 -3.0434 -9.9566
C3H/HeSnJ m -7.5 2.1088 -3.2665 -11.7335
C57BL/6J f -4.5 1.3337 -1.8225 -7.1775
C57BL/6J m -7.3846 0.8271 -5.7241 -9.0451
CBA/J f -6.0 2.1088 -1.7665 -10.2335
CBA/J m -7.5 2.1088 -3.2665 -11.7335
DBA/1LacJ f -1.5 2.1088 2.7335 -5.7335
DBA/1LacJ m -1.5 2.1088 2.7335 -5.7335
DBA/2J f -2.5 1.7218 0.9566 -5.9566
DBA/2J m -2.5 1.2175 -0.0558 -4.9442
LP/J f 0.75 1.4911 3.7435 -2.2435
LP/J m -6.0 1.4911 -3.0065 -8.9935
NOD/ShiLtJ f 0.0 2.1088 4.2335 -4.2335
NOD/ShiLtJ m 0.75 1.4911 3.7435 -2.2435
SJL/J f -4.5 2.1088 -0.2665 -8.7335
SJL/J m -4.5 1.4911 -1.5065 -7.4935
SKH2/J f -7.5 2.1088 -3.2665 -11.7335
SKH2/J m -4.5 1.7218 -1.0434 -7.9566


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/WySnJ both -2.25 1.2913 0.3425 -4.8425
C3H/HeSnJ both -7.0 1.3612 -4.2673 -9.7327
C57BL/6J both -5.9423 0.7847 -4.367 -7.5176
CBA/J both -6.75 1.4911 -3.7565 -9.7435
DBA/1LacJ both -1.5 1.4911 1.4935 -4.4935
DBA/2J both -2.5 1.0544 -0.3833 -4.6167
LP/J both -2.625 1.0544 -0.5083 -4.7417
NOD/ShiLtJ both 0.375 1.2913 2.9675 -2.2175
SJL/J both -4.5 1.2913 -1.9075 -7.0925
SKH2/J both -6.0 1.3612 -3.2673 -8.7327




  GWAS USING LINEAR MIXED MODELS