Project measure / variable:   Johnson1   pip8kHz_yng

ID, description, units MPD:1403   pip8kHz_yng   auditory brainstem response (ABR) threshold, 3-12 wk old group, sound pressure level   [dB]  8kHz pip stimulus  
Data set, strains Johnson1   inbred   42 strains     sex: both     age: 3-12wks
Procedure ABR test
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  STRAIN COMPARISON PLOT
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Johnson1 - auditory brainstem response (ABR) threshold, 3-12 wk old group, sound pressure level 8kHz pip stimulus



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested26 strains28 strains
Mean of the strain means43.6   dB 44.1   dB
Median of the strain means38.5   dB 40.7   dB
SD of the strain means± 18.7 ± 18.3
Coefficient of variation (CV)0.429 0.415
Min–max range of strain means23.3   –   90.6   dB 25.8   –   86.0   dB
Mean sample size per strain7.2   mice 6.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2077.9256 2077.9256 8.5119 0.004
strain 11 80634.3156 7330.3923 30.0278 < 0.0001
sex:strain 11 7874.8182 715.8926 2.9325 0.0014
Residuals 179 43697.4825 244.12


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P1/ReJ f 46.7 9.01   9 3.0 0.193 35.0, 65.0 0.17
129P1/ReJ m 48.1 11.6   8 4.11 0.242 30.0, 65.0 0.22
129P3/J f 47.0 8.37   5 3.74 0.178 40.0, 60.0 0.18
129T2/SvEmsJ f 32.0 4.47   5 2.0 0.14 25.0, 35.0 -0.62
A/HeJ f 37.9 3.34   12 0.965 0.0882 35.0, 45.0 -0.3
A/J f 40.0 17.6   7 6.64 0.439 25.0, 65.0 -0.19
A/J m 77.3 28.8   19 6.6 0.372 25.0, 104.0 1.81
ALR/LtJ m 79.0 8.94   5 4.0 0.113 75.0, 95.0 1.91
ALS/LtJ m 65.0 8.94   6 3.65 0.138 55.0, 75.0 1.14
A/WySnJ f 40.8 10.2   12 2.94 0.249 25.0, 55.0 -0.15
A/WySnJ m 46.8 12.3   11 3.71 0.263 25.0, 65.0 0.15
BPN/3J m 46.7 9.83   6 4.01 0.211 35.0, 60.0 0.14
BUB/BnJ f 86.2 14.6   11 4.4 0.169 60.0, 104.0 2.28
BUB/BnJ m 73.4 16.2   7 6.12 0.221 55.0, 104.0 1.6
C3H/HeOuJ m 26.0 2.24   5 1.0 0.086 25.0, 30.0 -0.99
C57BL/6J m 44.0 15.2   5 6.78 0.345 25.0, 65.0 -0.01
C57BLKS/J m 46.0 12.9   5 5.79 0.281 30.0, 60.0 0.1
C58/J f 31.0 2.24   5 1.0 0.0721 30.0, 35.0 -0.67
CBA/CaJ f 23.3 2.5   9 0.833 0.107 20.0, 25.0 -1.09
CBA/CaJ m 26.0 2.24   5 1.0 0.086 25.0, 30.0 -0.99
CE/J m 29.2 3.76   6 1.54 0.129 25.0, 35.0 -0.82
DBA/1J f 38.0 7.58   5 3.39 0.2 30.0, 45.0 -0.3
DBA/1J m 30.0 6.12   5 2.74 0.204 25.0, 40.0 -0.77
DBA/1LacJ m 33.0 6.71   5 3.0 0.203 30.0, 45.0 -0.61
DBA/2HaSmnJ m 39.0 20.4   5 9.14 0.524 25.0, 75.0 -0.28
DBA/2J f 40.0 15.3   7 5.77 0.382 25.0, 65.0 -0.19
DBA/2J m 41.4 9.69   14 2.59 0.234 25.0, 55.0 -0.15
FVB/NJ f 25.0 3.54   5 1.58 0.141 20.0, 30.0 -0.99
I/LnJ f 46.2 16.4   8 5.81 0.355 35.0, 85.0 0.14
JF1/MsJ f 90.6 18.9   9 6.29 0.209 55.0, 104.0 2.51
JF1/MsJ m 86.0 20.1   10 6.34 0.233 55.0, 104.0 2.29
LG/J m 30.0 3.54   5 1.58 0.118 25.0, 35.0 -0.77
LP/J f 28.6 6.9   7 2.61 0.242 20.0, 40.0 -0.8
MA/MyJ f 27.0 5.7   5 2.55 0.211 20.0, 35.0 -0.89
MRL/MpJ m 40.0 11.7   5 5.24 0.293 25.0, 50.0 -0.22
MSM/MsJ f 35.0 6.12   5 2.74 0.175 30.0, 45.0 -0.46
NOD.NON-H2nb1/LtJ f 39.0 9.62   5 4.3 0.247 25.0, 50.0 -0.25
NOD.NON-H2nb1/LtJ m 45.0 11.7   5 5.24 0.261 35.0, 60.0 0.05
NOD/ShiLtJ f 71.1 27.7   7 10.5 0.389 45.0, 104.0 1.47
NOD/ShiLtJ m 70.0 19.5   6 7.96 0.278 40.0, 95.0 1.42
NON/ShiLtJ f 25.0 3.54   5 1.58 0.141 20.0, 30.0 -0.99
NOR/LtJ f 74.0 17.1   5 7.65 0.231 45.0, 90.0 1.62
PERA/EiJ m 35.0 11.0   8 3.9 0.315 20.0, 45.0 -0.5
P/J m 30.0 12.0   8 4.23 0.398 15.0, 55.0 -0.77
PL/J f 35.0 7.45   10 2.36 0.213 30.0, 50.0 -0.46
PWK/PhJ f 37.1 2.67   7 1.01 0.072 35.0, 40.0 -0.35
RIIIS/J m 26.0 2.24   5 1.0 0.086 25.0, 30.0 -0.99
SEC/1ReJ m 26.0 2.24   5 1.0 0.086 25.0, 30.0 -0.99
SENCARA/PtJ f 27.3 5.63   13 1.56 0.206 20.0, 35.0 -0.87
SENCARA/PtJ m 29.0 6.52   5 2.92 0.225 20.0, 35.0 -0.83
SJL/J m 25.8 3.76   6 1.54 0.146 20.0, 30.0 -1.0
SKH2/J f 67.0 22.0   5 9.82 0.328 30.0, 85.0 1.25
WSB/EiJ f 42.9 10.4   7 3.91 0.242 25.0, 55.0 -0.04
WSB/EiJ m 41.4 11.8   7 4.46 0.285 30.0, 60.0 -0.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P1/ReJ f 46.6667 5.2081 56.9439 36.3895
129P1/ReJ m 48.125 5.524 59.0256 37.2244
A/J f 40.0 5.9054 51.6532 28.3468
A/J m 77.3158 3.5845 84.389 70.2425
A/WySnJ f 40.8333 4.5104 49.7336 31.933
A/WySnJ m 46.8182 4.7109 56.1143 37.5221
BUB/BnJ f 86.1818 4.7109 95.4779 76.8857
BUB/BnJ m 73.4286 5.9054 85.0818 61.7753
CBA/CaJ f 23.3333 5.2081 33.6105 13.0561
CBA/CaJ m 26.0 6.9874 39.7883 12.2117
DBA/1J f 38.0 6.9874 51.7883 24.2117
DBA/1J m 30.0 6.9874 43.7883 16.2117
DBA/2J f 40.0 5.9054 51.6532 28.3468
DBA/2J m 41.4286 4.1758 49.6687 33.1885
JF1/MsJ f 90.5556 5.2081 100.8328 80.2784
JF1/MsJ m 86.0 4.9409 95.7498 76.2502
NOD.NON-H2nb1/LtJ f 39.0 6.9874 52.7883 25.2117
NOD.NON-H2nb1/LtJ m 45.0 6.9874 58.7883 31.2117
NOD/ShiLtJ f 71.1429 5.9054 82.7961 59.4896
NOD/ShiLtJ m 70.0 6.3786 82.5869 57.4131
SENCARA/PtJ f 27.3077 4.3334 35.8588 18.7565
SENCARA/PtJ m 29.0 6.9874 42.7883 15.2117
WSB/EiJ f 42.8571 5.9054 54.5104 31.2039
WSB/EiJ m 41.4286 5.9054 53.0818 29.7753


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129P1/ReJ both 47.3958 3.796 54.8866 39.9051
A/J both 58.6579 3.4541 65.4739 51.8419
A/WySnJ both 43.8258 3.261 50.2607 37.3908
BUB/BnJ both 79.8052 3.7771 87.2586 72.3518
CBA/CaJ both 24.6667 4.3574 33.2652 16.0681
DBA/1J both 34.0 4.9409 43.7498 24.2502
DBA/2J both 40.7143 3.6163 47.8504 33.5782
JF1/MsJ both 88.2778 3.5894 95.3608 81.1947
NOD.NON-H2nb1/LtJ both 42.0 4.9409 51.7498 32.2502
NOD/ShiLtJ both 70.5714 4.3463 79.148 61.9949
SENCARA/PtJ both 28.1538 4.111 36.2662 20.0415
WSB/EiJ both 42.1429 4.1758 50.3829 33.9028




  GWAS USING LINEAR MIXED MODELS