Project measure / variable:   Lesage2   spleen_cells_tot

ID, description, units MPD:131924   spleen_cells_tot   total number of splenic lymphocytes (x 106)   [n]  
Data set, strains Lesage2   CC w/par   76 strains     sex: both     age: 5-8wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Lesage2 - total number of splenic lymphocytes (x 106)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested47 strains64 strains
Mean of the strain means72.62   n 74.1   n
Median of the strain means63.3   n 67.71   n
SD of the strain means± 37.286 ± 27.666
Coefficient of variation (CV)0.5134 0.3734
Min–max range of strain means18.44   –   186.6   n 26.199   –   152.9   n
Mean sample size per strain2.3   mice 2.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2300.9472 2300.9472 6.3687 0.0162
strain 11 53767.8312 4887.9847 13.5292 < 0.0001
sex:strain 11 9816.2059 892.3824 2.47 0.0202
Residuals 36 13006.5331 361.2926


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 55.5 6.364   2   4.5 0.1147 51.0, 60.0 -0.46
129S1/SvImJ m 69.6 25.456   2   18.0 0.3657 51.6, 87.6 -0.16
A/J f 70.8 1.6971   2   1.2 0.024 69.6, 72.0 -0.05
A/J m 81.6 8.4853   2   6.0 0.104 75.6, 87.6 0.27
C57BL/6J f 186.6 48.463   4 24.231 0.2597 126.0, 234.0 3.06
C57BL/6J m 129.6 0.0   1   0.0 0.0 129.6, 129.6 2.01
CAST/EiJ f 34.5 9.7581   2   6.9 0.2828 27.6, 41.4 -1.02
CAST/EiJ m 28.8 0.0   2   0.0 0.0 28.8, 28.8 -1.64
CC008/Geni m 65.76 9.1641   2   6.48 0.1394 59.28, 72.24 -0.3
CC010/Geni f 118.0 1.4142   2   1.0 0.012 117.0, 119.0 1.22
CC010/Geni m 79.92 0.0   1   0.0 0.0 79.92, 79.92 0.21
CC012/Geni f 63.32 10.444   3 6.0297 0.1649 51.6, 71.64 -0.25
CC012/Geni m 59.78 19.642   5 8.7842 0.3285 26.76, 78.48 -0.52
CC013/Geni m 120.4 30.213   3 17.443 0.251 86.52, 144.6 1.67
CC016/Geni m 90.72 2.8825   3 1.6642 0.0318 88.44, 93.96 0.6
CC020/Geni f 75.43 0.0   1   0.0 0.0 75.43, 75.43 0.08
CC020/Geni m 85.83 6.3427   2   4.485 0.0739 81.35, 90.32 0.42
CC023/Geni m 95.28 8.7427   3 5.0476 0.0918 85.2, 100.8 0.77
CC024/Geni f 53.7 8.4004   2   5.94 0.1564 47.76, 59.64 -0.51
CC024/Geni m 37.2 0.0   1   0.0 0.0 37.2, 37.2 -1.33
CC025/Geni f 18.44 3.1575   3 1.823 0.1712 16.44, 22.08 -1.45
CC026/Geni m 65.18 8.1963   3 4.7321 0.1258 59.91, 74.62 -0.32
CC027/Geni f 87.6 0.0   1   0.0 0.0 87.6, 87.6 0.4
CC027/Geni m 67.08 1.3576   2   0.96 0.0202 66.12, 68.04 -0.25
CC030/Geni f 41.16 14.595   2   10.32 0.3546 30.84, 51.48 -0.84
CC031/Geni f 130.9 0.0   1   0.0 0.0 130.9, 130.9 1.56
CC031/Geni m 120.6 17.748   2   12.55 0.1471 108.1, 133.2 1.68
CC032/Geni m 102.7 5.6593   3 3.2674 0.0551 96.36, 107.2 1.03
CC033/Geni f 76.56 19.807   3 11.436 0.2587 55.2, 94.32 0.11
CC038/Geni f 61.49 70.16   2   49.61 1.141 11.88, 111.1 -0.3
CC038/Geni m 114.1 0.0   1   0.0 0.0 114.1, 114.1 1.45
CC042/Geni m 90.57 14.159   3 8.1745 0.1563 74.52, 101.3 0.6
CC043/Geni m 81.0 14.448   3 8.3418 0.1784 72.36, 97.68 0.25
CC056/Geni f 40.92 0.0   1   0.0 0.0 40.92, 40.92 -0.85
CC056/Geni m 47.76 9.1641   2   6.48 0.1919 41.28, 54.24 -0.95
CC061/Geni m 68.89 8.0308   3 4.6366 0.1166 60.16, 75.96 -0.19
CIV2_FE f 50.96 5.0831   3 2.9348 0.0997 47.28, 56.76 -0.58
DET3_GA m 57.08 0.36661   3 0.21166 0.0064 56.76, 57.48 -0.62
DONNELL_HA f 52.8 10.182   2   7.2 0.1928 45.6, 60.0 -0.53
DONNELL_HA m 67.08 2.76   3 1.5935 0.0411 64.32, 69.84 -0.25
FIV_AC m 38.31 5.8332   4 2.9166 0.1523 30.24, 43.8 -1.29
FUF_HE f 40.0 6.3058   3 3.6407 0.1576 36.24, 47.28 -0.87
GALASUPREME_CE m 63.48 5.7937   3 3.345 0.0913 57.0, 68.16 -0.38
GIT_GC f 71.64 0.0   1   0.0 0.0 71.64, 71.64 -0.03
GIT_GC m 56.66 2.4042   2   1.7 0.0424 54.96, 58.36 -0.63
HAX2_EF f 56.12 11.846   3 6.8394 0.2111 42.6, 64.68 -0.44
HAZ_FE f 100.3 0.0   1   0.0 0.0 100.3, 100.3 0.74
HAZ_FE m 50.22 18.583   2   13.14 0.37 37.08, 63.36 -0.86
HIP_GA f 123.8 0.0   1   0.0 0.0 123.8, 123.8 1.37
HIP_GA m 152.9 0.77782   2   0.55 0.0051 152.3, 153.4 2.85
HOE_GC f 71.28 0.0   1   0.0 0.0 71.28, 71.28 -0.04
HOE_GC m 58.38 18.922   2   13.38 0.3241 45.0, 71.76 -0.57
JUD_EF m 59.46 7.6965   4 3.8483 0.1294 51.84, 69.0 -0.53
KAV_AF f 90.62 19.205   2   13.58 0.2119 77.04, 104.2 0.48
KAV_AF m 89.04 0.0   1   0.0 0.0 89.04, 89.04 0.54
LAM_DC f 51.72 0.0   1   0.0 0.0 51.72, 51.72 -0.56
LAM_DC m 62.16 2.2062   2   1.56 0.0355 60.6, 63.72 -0.43
LAT_HD f 97.93 21.559   5 9.6414 0.2202 78.96, 130.7 0.68
LAT_HD m 81.78 1.7819   2   1.26 0.0218 80.52, 83.04 0.28
LAX_FC f 108.7 0.0   1   0.0 0.0 108.7, 108.7 0.97
LAX_FC m 117.0 0.0   1   0.0 0.0 117.0, 117.0 1.55
LEL_FH m 66.72 24.438   2   17.28 0.3663 49.44, 84.0 -0.27
LIP_BG f 33.75 5.8472   4 2.9236 0.1732 25.08, 37.68 -1.04
LIP_BG m 26.199 0.0   1   0.0 0.0 26.199, 26.199 -1.73
LIV_DA f 100.4 0.0   1   0.0 0.0 100.4, 100.4 0.74
LIV_DA m 146.6 9.2631   2   6.55 0.0632 140.0, 153.1 2.62
LOD_AE f 63.56 11.294   3 6.5204 0.1777 50.52, 70.2 -0.24
LOM_BG m 48.0 6.8903   3 3.9781 0.1435 41.64, 55.32 -0.94
LOT_FC f 58.4 12.485   6 5.0968 0.2138 35.52, 70.56 -0.38
LOX_GF m 52.48 9.3764   3 5.4135 0.1787 43.44, 62.16 -0.78
LUF_AD m 75.39 40.039   5 17.906 0.5311 11.88, 112.9 0.05
LUG_EH m 42.64 15.181   3 8.7647 0.356 27.36, 57.72 -1.14
LUS_AH f 54.12 2.9098   3 1.68 0.0538 51.0, 56.76 -0.5
LUV_DG m 68.34 9.9489   4 4.9745 0.1456 55.56, 79.8 -0.21
LUZ_FH f 80.13 12.339   4 6.1697 0.154 62.16, 88.56 0.2
LUZ_FH m 80.04 0.0   1   0.0 0.0 80.04, 80.04 0.21
MERCURI_HF m 66.42 4.1532   3 2.3978 0.0625 62.75, 70.93 -0.28
NOD/ShiLtJ f 162.0 28.85   2   20.4 0.1781 141.6, 182.4 2.4
NOD/ShiLtJ m 89.4 7.6368   2   5.4 0.0854 84.0, 94.8 0.55
NZO/HlLtJ f 180.8 63.36   2   44.8 0.3504 136.0, 225.6 2.9
NZO/HlLtJ m 119.4 44.972   2   31.8 0.3766 87.6, 151.2 1.64
PAT_CD m 103.1 7.7538   3 4.4767 0.0752 98.28, 112.0 1.05
PEF_EC f 79.92 9.0526   3 5.2265 0.1133 73.32, 90.24 0.2
PEF_EC m 57.73 14.312   3 8.2629 0.2479 41.56, 68.76 -0.59
POH_DC f 64.24 3.362   3 1.941 0.0523 60.81, 67.53 -0.22
PWK/PhJ f 63.3 8.9095   2   6.3 0.1408 57.0, 69.6 -0.25
PWK/PhJ m 81.9 3.8184   2   2.7 0.0466 79.2, 84.6 0.28
SEH_AH f 49.32 0.0   1   0.0 0.0 49.32, 49.32 -0.62
SEH_AH m 49.77 3.8192   4 1.9096 0.0767 46.08, 54.84 -0.88
STUCKY_HF f 46.84 3.7878   3 2.1869 0.0809 43.92, 51.12 -0.69
STUCKY_HF m 38.04 0.0   1   0.0 0.0 38.04, 38.04 -1.3
VIT_ED f 50.56 15.378   3 8.8785 0.3042 33.96, 64.32 -0.59
VUX2_HF m 66.6 14.499   3 8.3711 0.2177 54.24, 82.56 -0.27
WAD f 27.72 4.2051   3 2.4278 0.1517 23.64, 32.04 -1.2
WSB/EiJ f 27.3 7.2125   2   5.1 0.2642 22.2, 32.4 -1.22
WSB/EiJ m 29.4 4.2426   2   3.0 0.1443 26.4, 32.4 -1.62
XAD8_BG f 57.48 0.0   1   0.0 0.0 57.48, 57.48 -0.41
XAD8_BG m 66.0 8.5065   3 4.9112 0.1289 56.4, 72.6 -0.29
XAH3_GH m 53.16 6.2261   3 3.5947 0.1171 48.12, 60.12 -0.76
XAS4_AF m 61.08 6.8147   3 3.9345 0.1116 56.28, 68.88 -0.47
XAV_AH m 82.52 8.5868   3 4.9576 0.1041 75.36, 92.04 0.3
XAW2_CD m 33.96 3.2244   2   2.28 0.0949 31.68, 36.24 -1.45
XEB2_AG f 74.76 3.2621   3 1.8834 0.0436 71.16, 77.52 0.06
XEB2_AG m 76.32 18.965   3 10.949 0.2485 57.6, 95.52 0.08
XEB_AF f 62.76 9.5035   2   6.72 0.1514 56.04, 69.48 -0.26
XEB_AF m 73.32 0.0   1   0.0 0.0 73.32, 73.32 -0.03
XEQ_EH m 100.2 6.9116   3 3.9904 0.069 92.88, 106.6 0.94
XXEN2_DC m 83.2 3.6739   3 2.1211 0.0442 78.96, 85.44 0.33
XXEN3_DC f 45.12 0.0   1   0.0 0.0 45.12, 45.12 -0.74
XXEN3_DC m 56.28 0.0   1   0.0 0.0 56.28, 56.28 -0.64
YOX_DE m 92.16 0.41569   3 0.24 0.0045 91.92, 92.64 0.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 63.32 10.9740995862 85.576505537 41.063494463
129S1/SvImJ 2 59.784 8.5005009874 77.0238150579 42.5441849421
A/J 1 52.8 13.4404721864 80.0585410115 25.5414589885
A/J 2 67.08 10.9740995862 89.336505537 44.823494463
BALB/cJ 1 97.928 8.5005009874 115.1678150579 80.6881849421
BALB/cJ 2 81.78 13.4404721864 109.0385410115 54.5214589885
BTBR T+ Itpr3tf/J 1 180.8 13.4404721864 208.0585410115 153.5414589885
BTBR T+ Itpr3tf/J 2 119.4 13.4404721864 146.6585410115 92.1414589885
C3H/HeJ 1 79.92 10.9740995862 102.176505537 57.663494463
C3H/HeJ 2 57.7333333333 10.9740995862 79.9898388703 35.4768277963
C57BL/6J 1 74.76 10.9740995862 97.016505537 52.503494463
C57BL/6J 2 76.32 10.9740995862 98.576505537 54.063494463
CAST/EiJ 1 162.0 13.4404721864 189.2585410115 134.7414589885
CAST/EiJ 2 89.4 13.4404721864 116.6585410115 62.1414589885
DBA/2J 1 34.5 13.4404721864 61.7585410115 7.2414589885
DBA/2J 2 28.8 13.4404721864 56.0585410115 1.5414589885
FVB/NJ 1 63.3 13.4404721864 90.5585410115 36.0414589885
FVB/NJ 2 81.9 13.4404721864 109.1585410115 54.6414589885
LP/J 1 55.5 13.4404721864 82.7585410115 28.2414589885
LP/J 2 69.6 13.4404721864 96.8585410115 42.3414589885
NZB/BlNJ 1 70.8 13.4404721864 98.0585410115 43.5414589885
NZB/BlNJ 2 81.6 13.4404721864 108.8585410115 54.3414589885
SWR/J 1 27.3 13.4404721864 54.5585410115 0.0414589885
SWR/J 2 29.4 13.4404721864 56.6585410115 2.1414589885


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 61.552 6.9406299924 75.6282500506 47.4757499494
A/J both 59.94 8.6757874905 77.5353125633 42.3446874367
BALB/cJ both 89.854 7.9514905777 105.9803703395 73.7276296605
BTBR T+ Itpr3tf/J both 150.1 9.5038490253 169.3746991945 130.8253008055
C3H/HeJ both 68.8266666667 7.7598602348 84.5643926574 53.0889406759
C57BL/6J both 75.54 7.7598602348 91.2777259907 59.8022740093
CAST/EiJ both 125.7 9.5038490253 144.9746991945 106.4253008055
DBA/2J both 31.65 9.5038490253 50.9246991945 12.3753008055
FVB/NJ both 72.6 9.5038490253 91.8746991945 53.3253008055
LP/J both 62.55 9.5038490253 81.8246991945 43.2753008055
NZB/BlNJ both 76.2 9.5038490253 95.4746991945 56.9253008055
SWR/J both 28.35 9.5038490253 47.6246991945 9.0753008055




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA