Project measure / variable:   Lesage2   generation_at_genotyping

ID, description, units MPD:131921   generation_at_genotyping   generation_at_genotyping     informational
Data set, strains Lesage2   CC w/par   68 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Lesage2 - generation_at_genotyping

CC013/GeniYOX_DECC026/GeniCC043/GeniCC030/GeniCC061/GeniJUD_EFCC027/GeniCC020/GeniPEF_ECCC010/GeniCC024/GeniCC016/GeniPOH_DCHOE_GCGALASUPREME_CECC042/GeniVIT_EDCC056/GeniPAT_CDMERCURI_HFCC008/GeniCC038/GeniWADCC012/GeniSEH_AHVUX2_HFCC033/GeniCC023/GeniDONNELL_HAHAX2_EFSTUCKY_HFCC031/GeniCC032/GeniHAZ_FEFIV_ACHIP_GAFUF_HECC025/GeniLOT_FCDET3_GACIV2_FELAX_FCGIT_GCXXEN3_DCXXEN2_DCLUV_DGLUZ_FHLAM_DCLOX_GFLUG_EHLEL_FHLUF_ADLAT_HDKAV_AFXAH3_GHLOD_AEXEB2_AGLIP_BGLIV_DAXAS4_AFXAV_AHXAW2_CDXEB_AFXEQ_EHXAD8_BGLUS_AHLOM_BG (no units) 16182022242628303234femalemale


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested39 strains56 strains
Mean of the strain means22.974   None 23.268   None
Median of the strain means23.0   None 23.5   None
SD of the strain means± 4.3255 ± 5.1996
Coefficient of variation (CV)0.1883 0.2235
Min–max range of strain means16.0   –   31.0   None 16.0   –   35.0   None
Mean sample size per strain2.3   mice 2.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 12.5 12.5 8.191290035e+29 < 0.0001
strain 4 625.375 156.3438 1.024525601e+31 < 0.0001
sex:strain 4 0.0 0.0 1.6442 0.1988
Residuals 22 0.0 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 95 (95)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
CC008/Geni m 26.0 0.0   2   0.0 0.0 26.0, 26.0 0.53
CC010/Geni f 29.0 0.0   2   0.0 0.0 29.0, 29.0 1.39
CC010/Geni m 29.0 0.0   1   0.0 0.0 29.0, 29.0 1.1
CC012/Geni f 25.0 0.0   3 0.0 0.0 25.0, 25.0 0.47
CC012/Geni m 25.0 0.0   5 0.0 0.0 25.0, 25.0 0.33
CC013/Geni m 35.0 0.0   3 0.0 0.0 35.0, 35.0 2.26
CC016/Geni m 28.0 0.0   3 0.0 0.0 28.0, 28.0 0.91
CC020/Geni f 29.0 0.0   1   0.0 0.0 29.0, 29.0 1.39
CC020/Geni m 29.0 0.0   2   0.0 0.0 29.0, 29.0 1.1
CC023/Geni m 24.0 0.0   3 0.0 0.0 24.0, 24.0 0.14
CC024/Geni f 28.0 0.0   2   0.0 0.0 28.0, 28.0 1.16
CC024/Geni m 28.0 0.0   1   0.0 0.0 28.0, 28.0 0.91
CC025/Geni f 23.0 0.0   3 0.0 0.0 23.0, 23.0 0.01
CC026/Geni m 32.0 0.0   3 0.0 0.0 32.0, 32.0 1.68
CC027/Geni f 29.0 0.0   1   0.0 0.0 29.0, 29.0 1.39
CC027/Geni m 29.0 0.0   2   0.0 0.0 29.0, 29.0 1.1
CC030/Geni f 31.0 0.0   2   0.0 0.0 31.0, 31.0 1.86
CC031/Geni f 24.0 0.0   1   0.0 0.0 24.0, 24.0 0.24
CC031/Geni m 24.0 0.0   2   0.0 0.0 24.0, 24.0 0.14
CC032/Geni m 24.0 0.0   3 0.0 0.0 24.0, 24.0 0.14
CC033/Geni f 24.0 0.0   3 0.0 0.0 24.0, 24.0 0.24
CC038/Geni f 26.0 0.0   2   0.0 0.0 26.0, 26.0 0.7
CC038/Geni m 26.0 0.0   1   0.0 0.0 26.0, 26.0 0.53
CC042/Geni m 27.0 0.0   3 0.0 0.0 27.0, 27.0 0.72
CC043/Geni m 32.0 0.0   3 0.0 0.0 32.0, 32.0 1.68
CC056/Geni f 27.0 0.0   1   0.0 0.0 27.0, 27.0 0.93
CC056/Geni m 27.0 0.0   2   0.0 0.0 27.0, 27.0 0.72
CC061/Geni m 31.0 0.0   3 0.0 0.0 31.0, 31.0 1.49
CIV2_FE f 21.0 0.0   3 0.0 0.0 21.0, 21.0 -0.46
DET3_GA m 22.0 0.0   3 0.0 0.0 22.0, 22.0 -0.24
DONNELL_HA f 24.0 0.0   2   0.0 0.0 24.0, 24.0 0.24
DONNELL_HA m 24.0 0.0   3 0.0 0.0 24.0, 24.0 0.14
FIV_AC m 23.0 0.0   4 0.0 0.0 23.0, 23.0 -0.05
FUF_HE f 23.0 0.0   3 0.0 0.0 23.0, 23.0 0.01
GALASUPREME_CE m 27.0 0.0   3 0.0 0.0 27.0, 27.0 0.72
GIT_GC f 21.0 0.0   1   0.0 0.0 21.0, 21.0 -0.46
GIT_GC m 21.0 0.0   2   0.0 0.0 21.0, 21.0 -0.44
HAX2_EF f 24.0 0.0   3 0.0 0.0 24.0, 24.0 0.24
HAZ_FE f 23.0 0.0   1   0.0 0.0 23.0, 23.0 0.01
HAZ_FE m 23.0 0.0   2   0.0 0.0 23.0, 23.0 -0.05
HIP_GA f 23.0 0.0   1   0.0 0.0 23.0, 23.0 0.01
HIP_GA m 23.0 0.0   2   0.0 0.0 23.0, 23.0 -0.05
HOE_GC f 28.0 0.0   1   0.0 0.0 28.0, 28.0 1.16
HOE_GC m 28.0 0.0   2   0.0 0.0 28.0, 28.0 0.91
JUD_EF m 31.0 0.0   4 0.0 0.0 31.0, 31.0 1.49
KAV_AF f 18.0 0.0   2   0.0 0.0 18.0, 18.0 -1.15
KAV_AF m 18.0 0.0   1   0.0 0.0 18.0, 18.0 -1.01
LAM_DC f 20.0 0.0   1   0.0 0.0 20.0, 20.0 -0.69
LAM_DC m 20.0 0.0   2   0.0 0.0 20.0, 20.0 -0.63
LAT_HD f 18.0 0.0   5 0.0 0.0 18.0, 18.0 -1.15
LAT_HD m 18.0 0.0   2   0.0 0.0 18.0, 18.0 -1.01
LAX_FC f 21.0 0.0   1   0.0 0.0 21.0, 21.0 -0.46
LAX_FC m 21.0 0.0   1   0.0 0.0 21.0, 21.0 -0.44
LEL_FH m 18.0 0.0   2   0.0 0.0 18.0, 18.0 -1.01
LIP_BG f 17.0 0.0   4 0.0 0.0 17.0, 17.0 -1.38
LIP_BG m 17.0 0.0   1   0.0 0.0 17.0, 17.0 -1.21
LIV_DA f 17.0 0.0   1   0.0 0.0 17.0, 17.0 -1.38
LIV_DA m 17.0 0.0   2   0.0 0.0 17.0, 17.0 -1.21
LOD_AE f 18.0 0.0   3 0.0 0.0 18.0, 18.0 -1.15
LOM_BG m 16.0 0.0   3 0.0 0.0 16.0, 16.0 -1.4
LOT_FC f 22.0 0.0   6 0.0 0.0 22.0, 22.0 -0.23
LOX_GF m 19.0 0.0   3 0.0 0.0 19.0, 19.0 -0.82
LUF_AD m 18.0 0.0   5 0.0 0.0 18.0, 18.0 -1.01
LUG_EH m 19.0 0.0   3 0.0 0.0 19.0, 19.0 -0.82
LUS_AH f 16.0 0.0   3 0.0 0.0 16.0, 16.0 -1.61
LUV_DG m 20.0 0.0   4 0.0 0.0 20.0, 20.0 -0.63
LUZ_FH f 20.0 0.0   4 0.0 0.0 20.0, 20.0 -0.69
LUZ_FH m 20.0 0.0   1   0.0 0.0 20.0, 20.0 -0.63
MERCURI_HF m 27.0 0.0   3 0.0 0.0 27.0, 27.0 0.72
PAT_CD m 27.0 0.0   3 0.0 0.0 27.0, 27.0 0.72
PEF_EC f 29.0 0.0   3 0.0 0.0 29.0, 29.0 1.39
PEF_EC m 29.0 0.0   3 0.0 0.0 29.0, 29.0 1.1
POH_DC f 28.0 0.0   3 0.0 0.0 28.0, 28.0 1.16
SEH_AH f 25.0 0.0   1   0.0 0.0 25.0, 25.0 0.47
SEH_AH m 25.0 0.0   4 0.0 0.0 25.0, 25.0 0.33
STUCKY_HF f 24.0 0.0   3 0.0 0.0 24.0, 24.0 0.24
STUCKY_HF m 24.0 0.0   1   0.0 0.0 24.0, 24.0 0.14
VIT_ED f 27.0 0.0   3 0.0 0.0 27.0, 27.0 0.93
VUX2_HF m 25.0 0.0   3 0.0 0.0 25.0, 25.0 0.33
WAD f 25.0 0.0   3 0.0 0.0 25.0, 25.0 0.47
XAD8_BG f 16.0 0.0   1   0.0 0.0 16.0, 16.0 -1.61
XAD8_BG m 16.0 0.0   3 0.0 0.0 16.0, 16.0 -1.4
XAH3_GH m 18.0 0.0   3 0.0 0.0 18.0, 18.0 -1.01
XAS4_AF m 17.0 0.0   3 0.0 0.0 17.0, 17.0 -1.21
XAV_AH m 17.0 0.0   3 0.0 0.0 17.0, 17.0 -1.21
XAW2_CD m 17.0 0.0   2   0.0 0.0 17.0, 17.0 -1.21
XEB2_AG f 17.0 0.0   3 0.0 0.0 17.0, 17.0 -1.38
XEB2_AG m 17.0 0.0   3 0.0 0.0 17.0, 17.0 -1.21
XEB_AF f 16.0 0.0   2   0.0 0.0 16.0, 16.0 -1.61
XEB_AF m 16.0 0.0   1   0.0 0.0 16.0, 16.0 -1.4
XEQ_EH m 16.0 0.0   3 0.0 0.0 16.0, 16.0 -1.4
XXEN2_DC m 20.0 0.0   3 0.0 0.0 20.0, 20.0 -0.63
XXEN3_DC f 20.0 0.0   1   0.0 0.0 20.0, 20.0 -0.69
XXEN3_DC m 20.0 0.0   1   0.0 0.0 20.0, 20.0 -0.63
YOX_DE m 33.0 0.0   3 0.0 0.0 33.0, 33.0 1.87


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 18.0 0.0 18.0 18.0
129S1/SvImJ 2 18.0 0.0 18.0 18.0
A/J 1 29.0 0.0 29.0 29.0
A/J 2 29.0 0.0 29.0 29.0
BALB/cJ 1 17.0 0.0 17.0 17.0
BALB/cJ 2 17.0 0.0 17.0 17.0
BTBR T+ Itpr3tf/J 1 25.0 0.0 25.0 25.0
BTBR T+ Itpr3tf/J 2 25.0 0.0 25.0 25.0
CAST/EiJ 1 24.0 0.0 24.0 24.0
CAST/EiJ 2 24.0 0.0 24.0 24.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 18.0 0.0 18.0 18.0
A/J both 29.0 0.0 29.0 29.0
BALB/cJ both 17.0 0.0 17.0 17.0
BTBR T+ Itpr3tf/J both 25.0 0.0 25.0 25.0
CAST/EiJ both 24.0 0.0 24.0 24.0




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA