Project measure / variable:   Lesage2   generation_at_phenotyping

ID, description, units MPD:131920   generation_at_phenotyping   generation_at_phenotyping     informational
Data set, strains Lesage2   CC w/par   68 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Lesage2 - generation_at_phenotyping



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested39 strains56 strains
Mean of the strain means24.94   None 25.051   None
Median of the strain means25.0   None 26.0   None
SD of the strain means± 4.4884 ± 5.3438
Coefficient of variation (CV)0.18 0.2133
Min–max range of strain means17.0   –   32.0   None 17.0   –   37.0   None
Mean sample size per strain2.3   mice 2.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.2812 5.2812 19.3646 0.0002
strain 4 594.7703 148.6926 545.2061 < 0.0001
sex:strain 4 1.4172 0.3543 1.2991 0.3011
Residuals 22 6.0 0.2727


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC008/Geni m 30.0 0.0   2   0.0 0.0 30.0, 30.0 0.93
CC010/Geni f 32.0 0.0   2   0.0 0.0 32.0, 32.0 1.57
CC010/Geni m 32.0 0.0   1   0.0 0.0 32.0, 32.0 1.3
CC012/Geni f 26.0 0.0   3 0.0 0.0 26.0, 26.0 0.24
CC012/Geni m 26.0 0.0   5 0.0 0.0 26.0, 26.0 0.18
CC013/Geni m 37.0 0.0   3 0.0 0.0 37.0, 37.0 2.24
CC016/Geni m 30.0 0.0   3 0.0 0.0 30.0, 30.0 0.93
CC020/Geni f 31.0 0.0   1   0.0 0.0 31.0, 31.0 1.35
CC020/Geni m 31.0 0.0   2   0.0 0.0 31.0, 31.0 1.11
CC023/Geni m 26.0 0.0   3 0.0 0.0 26.0, 26.0 0.18
CC024/Geni f 31.0 0.0   2   0.0 0.0 31.0, 31.0 1.35
CC024/Geni m 30.0 0.0   1   0.0 0.0 30.0, 30.0 0.93
CC025/Geni f 28.0 0.0   3 0.0 0.0 28.0, 28.0 0.68
CC026/Geni m 34.0 0.0   3 0.0 0.0 34.0, 34.0 1.67
CC027/Geni f 30.0 0.0   1   0.0 0.0 30.0, 30.0 1.13
CC027/Geni m 30.0 0.0   2   0.0 0.0 30.0, 30.0 0.93
CC030/Geni f 29.0 0.0   2   0.0 0.0 29.0, 29.0 0.9
CC031/Geni f 25.0 0.0   1   0.0 0.0 25.0, 25.0 0.01
CC031/Geni m 25.0 0.0   2   0.0 0.0 25.0, 25.0 -0.01
CC032/Geni m 26.0 0.0   3 0.0 0.0 26.0, 26.0 0.18
CC033/Geni f 26.0 0.0   3 0.0 0.0 26.0, 26.0 0.24
CC038/Geni f 26.0 0.0   2   0.0 0.0 26.0, 26.0 0.24
CC038/Geni m 26.0 0.0   1   0.0 0.0 26.0, 26.0 0.18
CC042/Geni m 30.0 0.0   3 0.0 0.0 30.0, 30.0 0.93
CC043/Geni m 34.0 0.0   3 0.0 0.0 34.0, 34.0 1.67
CC056/Geni f 30.0 0.0   1   0.0 0.0 30.0, 30.0 1.13
CC056/Geni m 30.0 0.0   2   0.0 0.0 30.0, 30.0 0.93
CC061/Geni m 26.0 0.0   3 0.0 0.0 26.0, 26.0 0.18
CIV2_FE f 22.0 0.0   3 0.0 0.0 22.0, 22.0 -0.66
DET3_GA m 24.0 0.0   3 0.0 0.0 24.0, 24.0 -0.2
DONNELL_HA f 26.0 1.4142   2   1.0 0.0544 25.0, 27.0 0.24
DONNELL_HA m 26.333 1.1547   3 0.66667 0.0438 25.0, 27.0 0.24
FIV_AC m 26.0 1.1547   4 0.57735 0.0444 25.0, 27.0 0.18
FUF_HE f 25.0 0.0   3 0.0 0.0 25.0, 25.0 0.01
GALASUPREME_CE m 30.0 0.0   3 0.0 0.0 30.0, 30.0 0.93
GIT_GC f 23.0 0.0   1   0.0 0.0 23.0, 23.0 -0.43
GIT_GC m 23.0 0.0   2   0.0 0.0 23.0, 23.0 -0.38
HAX2_EF f 26.0 0.0   3 0.0 0.0 26.0, 26.0 0.24
HAZ_FE f 24.0 0.0   1   0.0 0.0 24.0, 24.0 -0.21
HAZ_FE m 24.0 0.0   2   0.0 0.0 24.0, 24.0 -0.2
HIP_GA f 31.0 0.0   1   0.0 0.0 31.0, 31.0 1.35
HIP_GA m 31.0 0.0   2   0.0 0.0 31.0, 31.0 1.11
HOE_GC f 30.0 0.0   1   0.0 0.0 30.0, 30.0 1.13
HOE_GC m 30.0 0.0   2   0.0 0.0 30.0, 30.0 0.93
JUD_EF m 31.5 0.57735   4 0.28868 0.0183 31.0, 32.0 1.21
KAV_AF f 20.0 0.0   2   0.0 0.0 20.0, 20.0 -1.1
KAV_AF m 20.0 0.0   1   0.0 0.0 20.0, 20.0 -0.95
LAM_DC f 22.0 0.0   1   0.0 0.0 22.0, 22.0 -0.66
LAM_DC m 22.0 0.0   2   0.0 0.0 22.0, 22.0 -0.57
LAT_HD f 21.0 0.0   5 0.0 0.0 21.0, 21.0 -0.88
LAT_HD m 20.0 0.0   2   0.0 0.0 20.0, 20.0 -0.95
LAX_FC f 21.0 0.0   1   0.0 0.0 21.0, 21.0 -0.88
LAX_FC m 21.0 0.0   1   0.0 0.0 21.0, 21.0 -0.76
LEL_FH m 22.0 0.0   2   0.0 0.0 22.0, 22.0 -0.57
LIP_BG f 20.0 1.1547   4 0.57735 0.0577 19.0, 21.0 -1.1
LIP_BG m 21.0 0.0   1   0.0 0.0 21.0, 21.0 -0.76
LIV_DA f 19.0 0.0   1   0.0 0.0 19.0, 19.0 -1.32
LIV_DA m 19.0 0.0   2   0.0 0.0 19.0, 19.0 -1.13
LOD_AE f 21.0 0.0   3 0.0 0.0 21.0, 21.0 -0.88
LOM_BG m 19.0 0.0   3 0.0 0.0 19.0, 19.0 -1.13
LOT_FC f 21.333 0.5164   6 0.21082 0.0242 21.0, 22.0 -0.8
LOX_GF m 19.0 0.0   3 0.0 0.0 19.0, 19.0 -1.13
LUF_AD m 20.2 1.0954   5 0.4899 0.0542 19.0, 21.0 -0.91
LUG_EH m 21.0 0.0   3 0.0 0.0 21.0, 21.0 -0.76
LUS_AH f 21.0 0.0   3 0.0 0.0 21.0, 21.0 -0.88
LUV_DG m 20.5 0.57735   4 0.28868 0.0282 20.0, 21.0 -0.85
LUZ_FH f 22.0 0.0   4 0.0 0.0 22.0, 22.0 -0.66
LUZ_FH m 22.0 0.0   1   0.0 0.0 22.0, 22.0 -0.57
MERCURI_HF m 29.0 0.0   3 0.0 0.0 29.0, 29.0 0.74
PAT_CD m 29.0 0.0   3 0.0 0.0 29.0, 29.0 0.74
PEF_EC f 30.667 0.57735   3 0.33333 0.0188 30.0, 31.0 1.28
PEF_EC m 30.333 0.57735   3 0.33333 0.019 30.0, 31.0 0.99
POH_DC f 28.0 0.0   3 0.0 0.0 28.0, 28.0 0.68
SEH_AH f 27.0 0.0   1   0.0 0.0 27.0, 27.0 0.46
SEH_AH m 27.0 0.0   4 0.0 0.0 27.0, 27.0 0.36
STUCKY_HF f 24.667 1.1547   3 0.66667 0.0468 24.0, 26.0 -0.06
STUCKY_HF m 26.0 0.0   1   0.0 0.0 26.0, 26.0 0.18
VIT_ED f 32.0 0.0   3 0.0 0.0 32.0, 32.0 1.57
VUX2_HF m 27.0 0.0   3 0.0 0.0 27.0, 27.0 0.36
WAD f 29.0 0.0   3 0.0 0.0 29.0, 29.0 0.9
XAD8_BG f 18.0 0.0   1   0.0 0.0 18.0, 18.0 -1.55
XAD8_BG m 18.0 0.0   3 0.0 0.0 18.0, 18.0 -1.32
XAH3_GH m 19.0 0.0   3 0.0 0.0 19.0, 19.0 -1.13
XAS4_AF m 19.0 0.0   3 0.0 0.0 19.0, 19.0 -1.13
XAV_AH m 18.0 0.0   3 0.0 0.0 18.0, 18.0 -1.32
XAW2_CD m 19.0 0.0   2   0.0 0.0 19.0, 19.0 -1.13
XEB2_AG f 18.0 0.0   3 0.0 0.0 18.0, 18.0 -1.55
XEB2_AG m 18.0 0.0   3 0.0 0.0 18.0, 18.0 -1.32
XEB_AF f 19.0 0.0   2   0.0 0.0 19.0, 19.0 -1.32
XEB_AF m 20.0 0.0   1   0.0 0.0 20.0, 20.0 -0.95
XEQ_EH m 18.0 0.0   3 0.0 0.0 18.0, 18.0 -1.32
XXEN2_DC m 18.0 0.0   3 0.0 0.0 18.0, 18.0 -1.32
XXEN3_DC f 17.0 0.0   1   0.0 0.0 17.0, 17.0 -1.77
XXEN3_DC m 17.0 0.0   1   0.0 0.0 17.0, 17.0 -1.51
YOX_DE m 35.0 0.0   3 0.0 0.0 35.0, 35.0 1.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 21.0 0.2335496832 21.4843523981 20.5156476019
129S1/SvImJ 2 20.0 0.3692744729 20.7658283841 19.2341716159
A/J 1 30.6666666667 0.3015113446 31.2919629239 30.0413704095
A/J 2 30.3333333333 0.3015113446 30.9586295905 29.7080370761
BALB/cJ 1 18.0 0.3015113446 18.6252962572 17.3747037428
BALB/cJ 2 18.0 0.3015113446 18.6252962572 17.3747037428
BTBR T+ Itpr3tf/J 1 26.0 0.3015113446 26.6252962572 25.3747037428
BTBR T+ Itpr3tf/J 2 26.0 0.2335496832 26.4843523981 25.5156476019
CAST/EiJ 1 26.0 0.3692744729 26.7658283841 25.2341716159
CAST/EiJ 2 26.3333333333 0.3015113446 26.9586295905 25.7080370761


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 20.5 0.2184657244 20.953070182 20.046929818
A/J both 30.5 0.2132007164 30.9421512237 30.0578487763
BALB/cJ both 18.0 0.2132007164 18.4421512237 17.5578487763
BTBR T+ Itpr3tf/J both 26.0 0.1906925178 26.395472077 25.604527923
CAST/EiJ both 26.1666666667 0.2383656473 26.6610067629 25.6723265704




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA