Project measure / variable:   Lesage2   mouse_num

ID, description, units MPD:131918   mouse_num   mouse_num     informational
Data set, strains Lesage2   CC w/par   76 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Lesage2 - mouse_num



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested47 strains64 strains
Mean of the strain means58.68   None 43.318   None
Median of the strain means2.3333   None 2.0   None
SD of the strain means± 324.3 ± 278.1
Coefficient of variation (CV)5.5266 6.419
Min–max range of strain means1.0   –   2190.0   None 1.0   –   2188.0   None
Mean sample size per strain2.3   mice 2.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 84.0167 84.0167 55.8732 < 0.0001
strain 11 17828177.4591 1620743.4054 1077834.2844 < 0.0001
sex:strain 11 8.9743 0.8158 0.5426 0.8607
Residuals 36 54.1333 1.5037


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.5 0.70711   2   0.5 0.202 3.0, 4.0 -0.17
129S1/SvImJ m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.15
A/J f 3.5 0.70711   2   0.5 0.202 3.0, 4.0 -0.17
A/J m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.15
C57BL/6J f 451.0 4.0825   4 2.0412 0.0091 445.0, 454.0 1.21
C57BL/6J m 451.0 0.0   1   0.0 0.0 451.0, 451.0 1.47
CAST/EiJ f 3.5 0.70711   2   0.5 0.202 3.0, 4.0 -0.17
CAST/EiJ m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.15
CC008/Geni m 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.15
CC010/Geni f 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.18
CC010/Geni m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.14
CC012/Geni f 6.6667 1.5275   3 0.88192 0.2291 5.0, 8.0 -0.16
CC012/Geni m 3.2 1.9235   5 0.86023 0.6011 1.0, 6.0 -0.14
CC013/Geni m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
CC016/Geni m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
CC020/Geni f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.17
CC020/Geni m 2.0 1.4142   2   1.0 0.7071 1.0, 3.0 -0.15
CC023/Geni m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
CC024/Geni f 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.17
CC024/Geni m 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.15
CC025/Geni f 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.17
CC026/Geni m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
CC027/Geni f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.18
CC027/Geni m 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.15
CC030/Geni f 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.18
CC031/Geni f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.18
CC031/Geni m 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.15
CC032/Geni m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
CC033/Geni f 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.17
CC038/Geni f 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.17
CC038/Geni m 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.15
CC042/Geni m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
CC043/Geni m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
CC056/Geni f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.18
CC056/Geni m 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.15
CC061/Geni m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
CIV2_FE f 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.17
DET3_GA m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
DONNELL_HA f 3.5 2.1213   2   1.5 0.6061 2.0, 5.0 -0.17
DONNELL_HA m 2.6667 1.5275   3 0.88192 0.5728 1.0, 4.0 -0.15
FIV_AC m 2.5 1.291   4 0.6455 0.5164 1.0, 4.0 -0.15
FUF_HE f 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.17
GALASUPREME_CE m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
GIT_GC f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.18
GIT_GC m 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.15
HAX2_EF f 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.17
HAZ_FE f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.18
HAZ_FE m 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.15
HIP_GA f 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.17
HIP_GA m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.15
HOE_GC f 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.17
HOE_GC m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.15
JUD_EF m 2.5 1.291   4 0.6455 0.5164 1.0, 4.0 -0.15
KAV_AF f 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.18
KAV_AF m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.14
LAM_DC f 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.17
LAM_DC m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.15
LAT_HD f 5.0 1.5811   5 0.70711 0.3162 3.0, 7.0 -0.17
LAT_HD m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.15
LAX_FC f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.17
LAX_FC m 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.15
LEL_FH m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.15
LIP_BG f 2.5 1.291   4 0.6455 0.5164 1.0, 4.0 -0.17
LIP_BG m 5.0 0.0   1   0.0 0.0 5.0, 5.0 -0.14
LIV_DA f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.18
LIV_DA m 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.15
LOD_AE f 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.17
LOM_BG m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
LOT_FC f 3.5 1.8708   6 0.76376 0.5345 1.0, 6.0 -0.17
LOX_GF m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
LUF_AD m 3.0 1.5811   5 0.70711 0.527 1.0, 5.0 -0.14
LUG_EH m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
LUS_AH f 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.17
LUV_DG m 2.5 1.291   4 0.6455 0.5164 1.0, 4.0 -0.15
LUZ_FH f 2.5 1.291   4 0.6455 0.5164 1.0, 4.0 -0.17
LUZ_FH m 5.0 0.0   1   0.0 0.0 5.0, 5.0 -0.14
MERCURI_HF m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
NOD/ShiLtJ f 2190.0 0.70711   2   0.5 0.0003 2189.0, 2190.0 6.57
NOD/ShiLtJ m 2188.0 0.70711   2   0.5 0.0003 2187.0, 2188.0 7.71
NZO/HlLtJ f 3.5 0.70711   2   0.5 0.202 3.0, 4.0 -0.17
NZO/HlLtJ m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.15
PAT_CD m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
PEF_EC f 5.0 1.0   3 0.57735 0.2 4.0, 6.0 -0.17
PEF_EC m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
POH_DC f 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.17
PWK/PhJ f 3.5 0.70711   2   0.5 0.202 3.0, 4.0 -0.17
PWK/PhJ m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.15
SEH_AH f 5.0 0.0   1   0.0 0.0 5.0, 5.0 -0.17
SEH_AH m 2.5 1.291   4 0.6455 0.5164 1.0, 4.0 -0.15
STUCKY_HF f 2.3333 1.5275   3 0.88192 0.6547 1.0, 4.0 -0.17
STUCKY_HF m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.14
VIT_ED f 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.17
VUX2_HF m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
WAD f 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.17
WSB/EiJ f 3.5 0.70711   2   0.5 0.202 3.0, 4.0 -0.17
WSB/EiJ m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.15
XAD8_BG f 4.0 0.0   1   0.0 0.0 4.0, 4.0 -0.17
XAD8_BG m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
XAH3_GH m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
XAS4_AF m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
XAV_AH m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
XAW2_CD m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.15
XEB2_AG f 5.0 1.0   3 0.57735 0.2 4.0, 6.0 -0.17
XEB2_AG m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
XEB_AF f 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.18
XEB_AF m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.14
XEQ_EH m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
XXEN2_DC m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15
XXEN3_DC f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.18
XXEN3_DC m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.15
YOX_DE m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 6.6666666667 0.7079792143 8.102515064 5.2308182693
129S1/SvImJ 2 3.2 0.5483983413 4.3122033861 2.0877966139
A/J 1 3.5 0.8670939118 5.2585479608 1.7414520392
A/J 2 2.6666666667 0.7079792143 4.102515064 1.2308182693
BALB/cJ 1 5.0 0.5483983413 6.1122033861 3.8877966139
BALB/cJ 2 1.5 0.8670939118 3.2585479608 -0.2585479608
BTBR T+ Itpr3tf/J 1 3.5 0.8670939118 5.2585479608 1.7414520392
BTBR T+ Itpr3tf/J 2 1.5 0.8670939118 3.2585479608 -0.2585479608
C3H/HeJ 1 5.0 0.7079792143 6.4358483974 3.5641516026
C3H/HeJ 2 2.0 0.7079792143 3.4358483974 0.5641516026
C57BL/6J 1 5.0 0.7079792143 6.4358483974 3.5641516026
C57BL/6J 2 2.0 0.7079792143 3.4358483974 0.5641516026
CAST/EiJ 1 2189.5 0.8670939118 2191.2585479608 2187.7414520392
CAST/EiJ 2 2187.5 0.8670939118 2189.2585479608 2185.7414520392
DBA/2J 1 3.5 0.8670939118 5.2585479608 1.7414520392
DBA/2J 2 1.5 0.8670939118 3.2585479608 -0.2585479608
FVB/NJ 1 3.5 0.8670939118 5.2585479608 1.7414520392
FVB/NJ 2 1.5 0.8670939118 3.2585479608 -0.2585479608
LP/J 1 3.5 0.8670939118 5.2585479608 1.7414520392
LP/J 2 1.5 0.8670939118 3.2585479608 -0.2585479608
NZB/BlNJ 1 3.5 0.8670939118 5.2585479608 1.7414520392
NZB/BlNJ 2 1.5 0.8670939118 3.2585479608 -0.2585479608
SWR/J 1 3.5 0.8670939118 5.2585479608 1.7414520392
SWR/J 2 1.5 0.8670939118 3.2585479608 -0.2585479608


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 4.9333333333 0.4477653707 5.8414435954 4.0252230713
A/J both 3.0833333333 0.5597067133 4.2184711609 1.9481955057
BALB/cJ both 3.25 0.5129796762 4.2903710038 2.2096289962
BTBR T+ Itpr3tf/J both 2.5 0.6131279849 3.7434811881 1.2565188119
C3H/HeJ both 3.5 0.5006169034 4.5152981385 2.4847018615
C57BL/6J both 3.5 0.5006169034 4.5152981385 2.4847018615
CAST/EiJ both 2188.5 0.6131279849 2189.7434811881 2187.2565188119
DBA/2J both 2.5 0.6131279849 3.7434811881 1.2565188119
FVB/NJ both 2.5 0.6131279849 3.7434811881 1.2565188119
LP/J both 2.5 0.6131279849 3.7434811881 1.2565188119
NZB/BlNJ both 2.5 0.6131279849 3.7434811881 1.2565188119
SWR/J both 2.5 0.6131279849 3.7434811881 1.2565188119




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA