Project measure / variable:   Flaherty1   pct_open4

ID, description, units MPD:11817   pct_open4   percentage of time in open quadrants   [%]  q4  
Data set, strains Flaherty1   inbred   8 strains     sex: both     age: 8-9wks
Procedure elevated zero maze
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  STRAIN COMPARISON PLOT
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Flaherty1 - percentage of time in open quadrants q4



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means9.49   % 9.00   %
Median of the strain means6.27   % 6.38   %
SD of the strain means± 6.22 ± 5.80
Coefficient of variation (CV)0.655 0.644
Min–max range of strain means3.55   –   19.9   % 3.42   –   17.6   %
Mean sample size per strain19.9   mice 19.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 21.4645 21.4645 0.4482 0.5037
strain 7 9924.5608 1417.7944 29.6029 < 0.0001
sex:strain 7 66.4747 9.4964 0.1983 0.9857
Residuals 301 14416.0345 47.8938


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.92 10.7   20 2.4 2.18 -0.74
129S1/SvImJ m 3.42 3.16   20 0.707 0.924 -0.96
A/J f 3.55 5.55   20 1.24 1.56 -0.96
A/J m 3.8 4.65   20 1.04 1.22 -0.9
BALB/cByJ f 5.34 8.7   20 1.95 1.63 -0.67
BALB/cByJ m 5.9 6.23   20 1.39 1.06 -0.53
C3H/HeJ f 19.9 10.4   20 2.32 0.521 3.43, 42.5 1.67
C3H/HeJ m 17.6 8.57   19 1.97 0.486 1.48
C57BL/6J f 7.2 3.33   20 0.745 0.463 1.53, 12.6 -0.37
C57BL/6J m 6.87 3.52   20 0.787 0.513 0.433, 14.3 -0.37
CBA/J f 14.2 9.33   20 2.09 0.658 0.0667, 29.1 0.76
CBA/J m 13.4 9.77   19 2.24 0.727 0.76
DBA/2J f 4.94 5.18   20 1.16 1.05 -0.73
DBA/2J m 4.8 3.5   20 0.782 0.73 -0.72
FVB/NJ f 15.9 5.86   19 1.35 0.37 7.4, 25.4 1.03
FVB/NJ m 16.2 4.17   20 0.933 0.257 3.97, 23.0 1.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.9177 1.5475 7.9629 1.8724
129S1/SvImJ m 3.4217 1.5475 6.467 0.3765
A/J f 3.5517 1.5475 6.5969 0.5064
A/J m 3.8 1.5475 6.8452 0.7548
BALB/cByJ f 5.3375 1.5475 8.3827 2.2923
BALB/cByJ m 5.8965 1.5475 8.9418 2.8513
C3H/HeJ f 19.898 1.5475 22.9432 16.8528
C3H/HeJ m 17.6242 1.5877 20.7486 14.4999
C57BL/6J f 7.196 1.5475 10.2412 4.1508
C57BL/6J m 6.8651 1.5475 9.9104 3.8199
CBA/J f 14.1693 1.5475 17.2146 11.1241
CBA/J m 13.4312 1.5877 16.5556 10.3069
DBA/2J f 4.9365 1.5475 7.9817 1.8913
DBA/2J m 4.7955 1.5475 7.8407 1.7503
FVB/NJ f 15.8653 1.5877 18.9896 12.7409
FVB/NJ m 16.2135 1.5475 19.2587 13.1683


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 4.1697 1.0942 6.323 2.0164
A/J both 3.6758 1.0942 5.8291 1.5225
BALB/cByJ both 5.617 1.0942 7.7703 3.4637
C3H/HeJ both 18.7611 1.1085 20.9426 16.5796
C57BL/6J both 7.0306 1.0942 9.1839 4.8773
CBA/J both 13.8003 1.1085 15.9817 11.6188
DBA/2J both 4.866 1.0942 7.0193 2.7127
FVB/NJ both 16.0394 1.1085 18.2208 13.8579




  GWAS USING LINEAR MIXED MODELS