Project measure / variable:   Flaherty1   open

ID, description, units MPD:11805   open   duration in open quadrants   [s]  total  
Data set, strains Flaherty1   inbred   8 strains     sex: both     age: 8-9wks
Procedure elevated zero maze
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  STRAIN COMPARISON PLOT
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Flaherty1 - duration in open quadrants total



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means54.1   s 50.1   s
Median of the strain means42.3   s 34.1   s
SD of the strain means± 31.2 ± 31.6
Coefficient of variation (CV)0.577 0.631
Min–max range of strain means16.3   –   96.5   s 18.8   –   103   s
Mean sample size per strain19.9   mice 19.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1305.3335 1305.3335 1.1407 0.2864
strain 7 268948.2673 38421.181 33.5751 < 0.0001
sex:strain 7 4719.3859 674.198 0.5892 0.7647
Residuals 301 344445.3966 1144.3369


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 39.4 65.1   20 14.6 1.65 -0.47
129S1/SvImJ m 28.2 23.7   20 5.31 0.842 0.8, 72.5 -0.69
A/J f 16.3 19.0   20 4.25 1.17 -1.21
A/J m 18.8 21.2   20 4.73 1.13 -0.99
BALB/cByJ f 38.4 47.7   20 10.7 1.24 -0.5
BALB/cByJ m 26.8 27.8   20 6.21 1.03 0.1, 84.1 -0.74
C3H/HeJ f 96.5 39.6   20 8.86 0.41 20.4, 188.0 1.36
C3H/HeJ m 85.3 40.5   19 9.28 0.474 0.4, 144.0 1.11
C57BL/6J f 45.3 21.6   20 4.84 0.478 10.6, 99.3 -0.28
C57BL/6J m 38.1 14.4   20 3.22 0.378 9.4, 60.6 -0.38
CBA/J f 77.9 45.6   20 10.2 0.584 7.9, 154.0 0.76
CBA/J m 70.7 39.7   19 9.11 0.562 2.3, 149.0 0.65
DBA/2J f 24.6 19.9   20 4.45 0.807 -0.94
DBA/2J m 30.1 17.9   20 4.01 0.596 -0.63
FVB/NJ f 94.3 29.9   19 6.87 0.317 49.9, 147.0 1.29
FVB/NJ m 103.0 23.3   20 5.21 0.226 51.3, 139.0 1.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 39.41 7.5642 54.2954 24.5246
129S1/SvImJ m 28.195 7.5642 43.0804 13.3096
A/J f 16.28 7.5642 31.1654 1.3946
A/J m 18.8 7.5642 33.6854 3.9146
BALB/cByJ f 38.445 7.5642 53.3304 23.5596
BALB/cByJ m 26.84 7.5642 41.7254 11.9546
C3H/HeJ f 96.53 7.5642 111.4154 81.6446
C3H/HeJ m 85.3368 7.7607 100.6089 70.0648
C57BL/6J f 45.32 7.5642 60.2054 30.4346
C57BL/6J m 38.145 7.5642 53.0304 23.2596
CBA/J f 77.94 7.5642 92.8254 63.0546
CBA/J m 70.6947 7.7607 85.9668 55.4227
DBA/2J f 24.635 7.5642 39.5204 9.7496
DBA/2J m 30.08 7.5642 44.9654 15.1946
FVB/NJ f 94.3474 7.7607 109.6194 79.0753
FVB/NJ m 103.145 7.5642 118.0304 88.2596


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 33.8025 5.3487 44.328 23.277
A/J both 17.54 5.3487 28.0655 7.0145
BALB/cByJ both 32.6425 5.3487 43.168 22.117
C3H/HeJ both 90.9334 5.4186 101.5966 80.2703
C57BL/6J both 41.7325 5.3487 52.258 31.207
CBA/J both 74.3174 5.4186 84.9805 63.6542
DBA/2J both 27.3575 5.3487 37.883 16.832
FVB/NJ both 98.7462 5.4186 109.4093 88.083




  GWAS USING LINEAR MIXED MODELS