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Project measure / variable:   Graubert1   myeloid_tumor_enu

ID, description, units MPD:11659   myeloid_tumor_enu   myeloid tumor frequency rate   [score]  ENU  
ENU study
Data set, strains Graubert1   inbred   20 strains     sex: both     age: 13-68wks
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  STRAIN COMPARISON PLOT
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Graubert1 - myeloid tumor frequency rate ENU



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested20 strains20 strains
Mean of the strain means0.0722   score 0.0406   score
Median of the strain means0   score 0   score
SD of the strain means± 0.127 ± 0.0722
Coefficient of variation (CV)1.76 1.78
Min–max range of strain means0   –   0.400   score 0   –   0.167   score
Mean sample size per strain6.1   mice 6.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0628 0.0628 1.1858 0.2775
strain 19 2.1624 0.1138 2.1476 0.0049
sex:strain 19 0.3593 0.0189 0.3568 0.9945
Residuals 200 10.5988 0.053


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   6 0.0 0.0 -0.57
129S1/SvImJ m 0.0 0.0   6 0.0 0.0 -0.56
A/J f 0.0 0.0   8 0.0 0.0 -0.57
A/J m 0.0 0.0   6 0.0 0.0 -0.56
AKR/J f 0.167 0.408   6 0.167 2.45 0.74
AKR/J m 0.167 0.408   6 0.167 2.45 1.75
BALB/cByJ f 0.167 0.408   6 0.167 2.45 0.74
BALB/cByJ m 0.167 0.408   6 0.167 2.45 1.75
C3H/HeJ f 0.0 0.0   6 0.0 0.0 -0.57
C3H/HeJ m 0.0 0.0   6 0.0 0.0 -0.56
C57BL/6J f 0.0 0.0   6 0.0 0.0 -0.57
C57BL/6J m 0.0 0.0   7 0.0 0.0 -0.56
C57L/J f 0.0 0.0   6 0.0 0.0 -0.57
C57L/J m 0.0 0.0   6 0.0 0.0 -0.56
C58/J f 0.0 0.0   6 0.0 0.0 -0.57
C58/J m 0.0 0.0   6 0.0 0.0 -0.56
CAST/EiJ f 0.0 0.0   6 0.0 0.0 -0.57
CAST/EiJ m 0.0 0.0   6 0.0 0.0 -0.56
DBA/2J f 0.4 0.548   5 0.245 1.37 2.57
DBA/2J m 0.143 0.378   7 0.143 2.65 1.42
FVB/NJ f 0.0 0.0   6 0.0 0.0 -0.57
FVB/NJ m 0.0 0.0   6 0.0 0.0 -0.56
MOLF/EiJ f 0.0 0.0   2   0.0 0.0 -0.57
MOLF/EiJ m 0.0 0.0   5 0.0 0.0 -0.56
NOD/ShiLtJ f 0.167 0.408   6 0.167 2.45 0.74
NOD/ShiLtJ m 0.167 0.408   6 0.167 2.45 1.75
NZB/BlNJ f 0.0 0.0   6 0.0 0.0 -0.57
NZB/BlNJ m 0.0 0.0   6 0.0 0.0 -0.56
PERA/EiJ f 0.0 0.0   6 0.0 0.0 -0.57
PERA/EiJ m 0.0 0.0   6 0.0 0.0 -0.56
PL/J f 0.167 0.408   6 0.167 2.45 0.74
PL/J m 0.0 0.0   6 0.0 0.0 -0.56
SJL/J f 0.0 0.0   4 0.0 0.0 -0.57
SJL/J m 0.0 0.0   6 0.0 0.0 -0.56
SM/J f 0.0 0.0   6 0.0 0.0 -0.57
SM/J m 0.0 0.0   6 0.0 0.0 -0.56
SPRET/EiJ f 0.0 0.0   10 0.0 0.0 -0.57
SPRET/EiJ m 0.0 0.0   4 0.0 0.0 -0.56
SWR/J f 0.375 0.518   8 0.183 1.38 2.38
SWR/J m 0.167 0.408   6 0.167 2.45 1.75


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.094 0.1853 -0.1853
129S1/SvImJ m 0.0 0.094 0.1853 -0.1853
A/J f 0.0 0.0814 0.1605 -0.1605
A/J m 0.0 0.094 0.1853 -0.1853
AKR/J f 0.1667 0.094 0.352 -0.0187
AKR/J m 0.1667 0.094 0.352 -0.0187
BALB/cByJ f 0.1667 0.094 0.352 -0.0187
BALB/cByJ m 0.1667 0.094 0.352 -0.0187
C3H/HeJ f 0.0 0.094 0.1853 -0.1853
C3H/HeJ m 0.0 0.094 0.1853 -0.1853
C57BL/6J f 0.0 0.094 0.1853 -0.1853
C57BL/6J m 0.0 0.087 0.1716 -0.1716
C57L/J f 0.0 0.094 0.1853 -0.1853
C57L/J m 0.0 0.094 0.1853 -0.1853
C58/J f 0.0 0.094 0.1853 -0.1853
C58/J m 0.0 0.094 0.1853 -0.1853
CAST/EiJ f 0.0 0.094 0.1853 -0.1853
CAST/EiJ m 0.0 0.094 0.1853 -0.1853
DBA/2J f 0.4 0.103 0.603 0.197
DBA/2J m 0.1429 0.087 0.3144 -0.0287
FVB/NJ f 0.0 0.094 0.1853 -0.1853
FVB/NJ m 0.0 0.094 0.1853 -0.1853
MOLF/EiJ f 0.0 0.1628 0.321 -0.321
MOLF/EiJ m 0.0 0.103 0.203 -0.203
NOD/ShiLtJ f 0.1667 0.094 0.352 -0.0187
NOD/ShiLtJ m 0.1667 0.094 0.352 -0.0187
NZB/BlNJ f 0.0 0.094 0.1853 -0.1853
NZB/BlNJ m 0.0 0.094 0.1853 -0.1853
PERA/EiJ f 0.0 0.094 0.1853 -0.1853
PERA/EiJ m 0.0 0.094 0.1853 -0.1853
PL/J f 0.1667 0.094 0.352 -0.0187
PL/J m 0.0 0.094 0.1853 -0.1853
SJL/J f 0.0 0.1151 0.227 -0.227
SJL/J m 0.0 0.094 0.1853 -0.1853
SM/J f 0.0 0.094 0.1853 -0.1853
SM/J m 0.0 0.094 0.1853 -0.1853
SPRET/EiJ f 0.0 0.0728 0.1435 -0.1435
SPRET/EiJ m 0.0 0.1151 0.227 -0.227
SWR/J f 0.375 0.0814 0.5355 0.2145
SWR/J m 0.1667 0.094 0.352 -0.0187


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0 0.0665 0.131 -0.131
A/J both 0.0 0.0622 0.1226 -0.1226
AKR/J both 0.1667 0.0665 0.2977 0.0356
BALB/cByJ both 0.1667 0.0665 0.2977 0.0356
C3H/HeJ both 0.0 0.0665 0.131 -0.131
C57BL/6J both 0.0 0.064 0.1263 -0.1263
C57L/J both 0.0 0.0665 0.131 -0.131
C58/J both 0.0 0.0665 0.131 -0.131
CAST/EiJ both 0.0 0.0665 0.131 -0.131
DBA/2J both 0.2714 0.0674 0.4043 0.1385
FVB/NJ both 0.0 0.0665 0.131 -0.131
MOLF/EiJ both 0.0 0.0963 0.1899 -0.1899
NOD/ShiLtJ both 0.1667 0.0665 0.2977 0.0356
NZB/BlNJ both 0.0 0.0665 0.131 -0.131
PERA/EiJ both 0.0 0.0665 0.131 -0.131
PL/J both 0.0833 0.0665 0.2144 -0.0477
SJL/J both 0.0 0.0743 0.1465 -0.1465
SM/J both 0.0 0.0665 0.131 -0.131
SPRET/EiJ both 0.0 0.0681 0.1343 -0.1343
SWR/J both 0.2708 0.0622 0.3934 0.1483




  GWAS USING LINEAR MIXED MODELS