Project measure / variable:   Graubert1   lymphoid_tumor

ID, description, units MPD:11618   lymphoid_tumor   lymphoid tumor frequency rate   [score]  control  
ENU study
Data set, strains Graubert1   inbred   20 strains     sex: both     age: 13-68wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Graubert1 - lymphoid tumor frequency rate control



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested20 strains20 strains
Mean of the strain means0.0250   score 0   score
Median of the strain means0   score 0   score
SD of the strain means± 0.112 ± 0
Coefficient of variation (CV)4.47 0
Min–max range of strain means0   –   0.500   score 0   –   0   score
Mean sample size per strain5.6   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0409 0.0409 4.8537 0.0289
strain 18 0.7097 0.0394 4.6788 < 0.0001
sex:strain 18 0.7077 0.0393 4.6658 < 0.0001
Residuals 178 1.5 0.0084


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   6 0.0 0.0 -0.22
129S1/SvImJ m 0.0 0.0   6 0.0 0.0 0.0
A/J f 0.0 0.0   4 0.0 0.0 -0.22
A/J m 0.0 0.0   6 0.0 0.0 0.0
AKR/J f 0.5 0.548   6 0.224 1.1 4.25
AKR/J m 0.0 0.0   6 0.0 0.0 0.0
BALB/cByJ f 0.0 0.0   6 0.0 0.0 -0.22
BALB/cByJ m 0.0 0.0   6 0.0 0.0 0.0
C3H/HeJ f 0.0 0.0   6 0.0 0.0 -0.22
C3H/HeJ m 0.0 0.0   6 0.0 0.0 0.0
C57BL/6J f 0.0 0.0   6 0.0 0.0 -0.22
C57BL/6J m 0.0 0.0   6 0.0 0.0 0.0
C57L/J f 0.0 0.0   6 0.0 0.0 -0.22
C57L/J m 0.0 0.0   6 0.0 0.0 0.0
C58/J f 0.0 0.0   6 0.0 0.0 -0.22
C58/J m 0.0 0.0   6 0.0 0.0 0.0
CAST/EiJ f 0.0 0.0   6 0.0 0.0 -0.22
CAST/EiJ m 0.0 0.0   6 0.0 0.0 0.0
DBA/2J f 0.0 0.0   6 0.0 0.0 -0.22
DBA/2J m 0.0 0.0   2   0.0 0.0 0.0
FVB/NJ f 0.0 0.0   6 0.0 0.0 -0.22
FVB/NJ m 0.0 0.0   6 0.0 0.0 0.0
MOLF/EiJ f 0.0 0.0   1   0.0 0.0 -0.22
MOLF/EiJ m 0.0 0.0   6 0.0 0.0 0.0
NOD/ShiLtJ f 0.0 0.0   6 0.0 0.0 -0.22
NOD/ShiLtJ m 0.0 0.0   6 0.0 0.0 0.0
NZB/BlNJ f 0.0 0.0   6 0.0 0.0 -0.22
NZB/BlNJ m 0.0 0.0   6 0.0 0.0 0.0
PERA/EiJ f 0.0 0.0   6 0.0 0.0 -0.22
PERA/EiJ m 0.0 0.0   6 0.0 0.0 0.0
PL/J f 0.0 0.0   6 0.0 0.0 -0.22
PL/J m 0.0 0.0   6 0.0 0.0 0.0
SJL/J f 0.0 0.0   8 0.0 0.0 -0.22
SJL/J m 0.0 0.0   6 0.0 0.0 0.0
SM/J f 0.0 0.0   6 0.0 0.0 -0.22
SM/J m 0.0 0.0   6 0.0 0.0 0.0
SPRET/EiJ f 0.0 0.0   3 0.0 0.0 -0.22
SPRET/EiJ m 0.0 0.0   3 0.0 0.0 0.0
SWR/J f 0.0 0.0   4 0.0 0.0 -0.22
SWR/J m 0.0 0.0   6 0.0 0.0 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.0375 0.074 -0.074
129S1/SvImJ m 0.0 0.0375 0.074 -0.074
A/J f 0.0 0.0459 0.0906 -0.0906
A/J m 0.0 0.0375 0.074 -0.074
AKR/J f 0.5 0.0375 0.574 0.426
AKR/J m 0.0 0.0375 0.074 -0.074
BALB/cByJ f 0.0 0.0375 0.074 -0.074
BALB/cByJ m 0.0 0.0375 0.074 -0.074
C3H/HeJ f 0.0 0.0375 0.074 -0.074
C3H/HeJ m 0.0 0.0375 0.074 -0.074
C57BL/6J f 0.0 0.0375 0.074 -0.074
C57BL/6J m 0.0 0.0375 0.074 -0.074
C57L/J f 0.0 0.0375 0.074 -0.074
C57L/J m 0.0 0.0375 0.074 -0.074
C58/J f 0.0 0.0375 0.074 -0.074
C58/J m 0.0 0.0375 0.074 -0.074
CAST/EiJ f 0.0 0.0375 0.074 -0.074
CAST/EiJ m 0.0 0.0375 0.074 -0.074
DBA/2J f 0.0 0.0375 0.074 -0.074
DBA/2J m 0.0 0.0649 0.1281 -0.1281
FVB/NJ f 0.0 0.0375 0.074 -0.074
FVB/NJ m 0.0 0.0375 0.074 -0.074
NOD/ShiLtJ f 0.0 0.0375 0.074 -0.074
NOD/ShiLtJ m 0.0 0.0375 0.074 -0.074
NZB/BlNJ f 0.0 0.0375 0.074 -0.074
NZB/BlNJ m 0.0 0.0375 0.074 -0.074
PERA/EiJ f 0.0 0.0375 0.074 -0.074
PERA/EiJ m 0.0 0.0375 0.074 -0.074
PL/J f 0.0 0.0375 0.074 -0.074
PL/J m 0.0 0.0375 0.074 -0.074
SJL/J f 0.0 0.0325 0.064 -0.064
SJL/J m 0.0 0.0375 0.074 -0.074
SM/J f 0.0 0.0375 0.074 -0.074
SM/J m 0.0 0.0375 0.074 -0.074
SPRET/EiJ f 0.0 0.053 0.1046 -0.1046
SPRET/EiJ m 0.0 0.053 0.1046 -0.1046
SWR/J f 0.0 0.0459 0.0906 -0.0906
SWR/J m 0.0 0.0375 0.074 -0.074


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0 0.0265 0.0523 -0.0523
A/J both 0.0 0.0296 0.0585 -0.0585
AKR/J both 0.25 0.0265 0.3023 0.1977
BALB/cByJ both 0.0 0.0265 0.0523 -0.0523
C3H/HeJ both 0.0 0.0265 0.0523 -0.0523
C57BL/6J both 0.0 0.0265 0.0523 -0.0523
C57L/J both 0.0 0.0265 0.0523 -0.0523
C58/J both 0.0 0.0265 0.0523 -0.0523
CAST/EiJ both 0.0 0.0265 0.0523 -0.0523
DBA/2J both 0.0 0.0375 0.074 -0.074
FVB/NJ both 0.0 0.0265 0.0523 -0.0523
NOD/ShiLtJ both 0.0 0.0265 0.0523 -0.0523
NZB/BlNJ both 0.0 0.0265 0.0523 -0.0523
PERA/EiJ both 0.0 0.0265 0.0523 -0.0523
PL/J both 0.0 0.0265 0.0523 -0.0523
SJL/J both 0.0 0.0248 0.0489 -0.0489
SM/J both 0.0 0.0265 0.0523 -0.0523
SPRET/EiJ both 0.0 0.0375 0.074 -0.074
SWR/J both 0.0 0.0296 0.0585 -0.0585




  GWAS USING LINEAR MIXED MODELS