Phenotype measure:   Graubert1   adenoma_lung



  STRAIN COMPARISON PLOT
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Graubert1 - lung adenoma frequency rate control



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested20 strains20 strains
Mean of the strain means0   score 0.0167   score
Median of the strain means0   score 0   score
SD of the strain means± 0 ± 0.0745
Coefficient of variation (CV)0 4.47
Min–max range of strain means0   –   0   score 0   –   0.333   score
Mean sample size per strain5.6   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0189 0.0189 2.5184 0.1143
strain 18 0.3746 0.0208 2.7786 0.0003
sex:strain 18 0.2546 0.0141 1.8886 0.0193
Residuals 178 1.3333 0.0075


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   6 0.0 0.0 0.0
129S1/SvImJ m 0.0 0.0   6 0.0 0.0 -0.22
A/J f 0.0 0.0   4 0.0 0.0 0.0
A/J m 0.333 0.516   6 0.211 1.55 4.25
AKR/J f 0.0 0.0   6 0.0 0.0 0.0
AKR/J m 0.0 0.0   6 0.0 0.0 -0.22
BALB/cByJ f 0.0 0.0   6 0.0 0.0 0.0
BALB/cByJ m 0.0 0.0   6 0.0 0.0 -0.22
C3H/HeJ f 0.0 0.0   6 0.0 0.0 0.0
C3H/HeJ m 0.0 0.0   6 0.0 0.0 -0.22
C57BL/6J f 0.0 0.0   6 0.0 0.0 0.0
C57BL/6J m 0.0 0.0   6 0.0 0.0 -0.22
C57L/J f 0.0 0.0   6 0.0 0.0 0.0
C57L/J m 0.0 0.0   6 0.0 0.0 -0.22
C58/J f 0.0 0.0   6 0.0 0.0 0.0
C58/J m 0.0 0.0   6 0.0 0.0 -0.22
CAST/EiJ f 0.0 0.0   6 0.0 0.0 0.0
CAST/EiJ m 0.0 0.0   6 0.0 0.0 -0.22
DBA/2J f 0.0 0.0   6 0.0 0.0 0.0
DBA/2J m 0.0 0.0   2   0.0 0.0 -0.22
FVB/NJ f 0.0 0.0   6 0.0 0.0 0.0
FVB/NJ m 0.0 0.0   6 0.0 0.0 -0.22
MOLF/EiJ f 0.0 0.0   1   0.0 0.0 0.0
MOLF/EiJ m 0.0 0.0   6 0.0 0.0 -0.22
NOD/ShiLtJ f 0.0 0.0   6 0.0 0.0 0.0
NOD/ShiLtJ m 0.0 0.0   6 0.0 0.0 -0.22
NZB/BlNJ f 0.0 0.0   6 0.0 0.0 0.0
NZB/BlNJ m 0.0 0.0   6 0.0 0.0 -0.22
PERA/EiJ f 0.0 0.0   6 0.0 0.0 0.0
PERA/EiJ m 0.0 0.0   6 0.0 0.0 -0.22
PL/J f 0.0 0.0   6 0.0 0.0 0.0
PL/J m 0.0 0.0   6 0.0 0.0 -0.22
SJL/J f 0.0 0.0   8 0.0 0.0 0.0
SJL/J m 0.0 0.0   6 0.0 0.0 -0.22
SM/J f 0.0 0.0   6 0.0 0.0 0.0
SM/J m 0.0 0.0   6 0.0 0.0 -0.22
SPRET/EiJ f 0.0 0.0   3 0.0 0.0 0.0
SPRET/EiJ m 0.0 0.0   3 0.0 0.0 -0.22
SWR/J f 0.0 0.0   4 0.0 0.0 0.0
SWR/J m 0.0 0.0   6 0.0 0.0 -0.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.0353 0.0697 -0.0697
129S1/SvImJ m 0.0 0.0353 0.0697 -0.0697
A/J f 0.0 0.0433 0.0854 -0.0854
A/J m 0.3333 0.0353 0.4031 0.2636
AKR/J f 0.0 0.0353 0.0697 -0.0697
AKR/J m 0.0 0.0353 0.0697 -0.0697
BALB/cByJ f 0.0 0.0353 0.0697 -0.0697
BALB/cByJ m 0.0 0.0353 0.0697 -0.0697
C3H/HeJ f 0.0 0.0353 0.0697 -0.0697
C3H/HeJ m 0.0 0.0353 0.0697 -0.0697
C57BL/6J f 0.0 0.0353 0.0697 -0.0697
C57BL/6J m 0.0 0.0353 0.0697 -0.0697
C57L/J f 0.0 0.0353 0.0697 -0.0697
C57L/J m 0.0 0.0353 0.0697 -0.0697
C58/J f 0.0 0.0353 0.0697 -0.0697
C58/J m 0.0 0.0353 0.0697 -0.0697
CAST/EiJ f 0.0 0.0353 0.0697 -0.0697
CAST/EiJ m 0.0 0.0353 0.0697 -0.0697
DBA/2J f 0.0 0.0353 0.0697 -0.0697
DBA/2J m 0.0 0.0612 0.1208 -0.1208
FVB/NJ f 0.0 0.0353 0.0697 -0.0697
FVB/NJ m 0.0 0.0353 0.0697 -0.0697
NOD/ShiLtJ f 0.0 0.0353 0.0697 -0.0697
NOD/ShiLtJ m 0.0 0.0353 0.0697 -0.0697
NZB/BlNJ f 0.0 0.0353 0.0697 -0.0697
NZB/BlNJ m 0.0 0.0353 0.0697 -0.0697
PERA/EiJ f 0.0 0.0353 0.0697 -0.0697
PERA/EiJ m 0.0 0.0353 0.0697 -0.0697
PL/J f 0.0 0.0353 0.0697 -0.0697
PL/J m 0.0 0.0353 0.0697 -0.0697
SJL/J f 0.0 0.0306 0.0604 -0.0604
SJL/J m 0.0 0.0353 0.0697 -0.0697
SM/J f 0.0 0.0353 0.0697 -0.0697
SM/J m 0.0 0.0353 0.0697 -0.0697
SPRET/EiJ f 0.0 0.05 0.0986 -0.0986
SPRET/EiJ m 0.0 0.05 0.0986 -0.0986
SWR/J f 0.0 0.0433 0.0854 -0.0854
SWR/J m 0.0 0.0353 0.0697 -0.0697


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0 0.025 0.0493 -0.0493
A/J both 0.1667 0.0279 0.2218 0.1115
AKR/J both 0.0 0.025 0.0493 -0.0493
BALB/cByJ both 0.0 0.025 0.0493 -0.0493
C3H/HeJ both 0.0 0.025 0.0493 -0.0493
C57BL/6J both 0.0 0.025 0.0493 -0.0493
C57L/J both 0.0 0.025 0.0493 -0.0493
C58/J both 0.0 0.025 0.0493 -0.0493
CAST/EiJ both 0.0 0.025 0.0493 -0.0493
DBA/2J both 0.0 0.0353 0.0697 -0.0697
FVB/NJ both 0.0 0.025 0.0493 -0.0493
NOD/ShiLtJ both 0.0 0.025 0.0493 -0.0493
NZB/BlNJ both 0.0 0.025 0.0493 -0.0493
PERA/EiJ both 0.0 0.025 0.0493 -0.0493
PL/J both 0.0 0.025 0.0493 -0.0493
SJL/J both 0.0 0.0234 0.0461 -0.0461
SM/J both 0.0 0.025 0.0493 -0.0493
SPRET/EiJ both 0.0 0.0353 0.0697 -0.0697
SWR/J both 0.0 0.0279 0.0551 -0.0551




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.