Phenotype measure:   Graubert1   NEUT

ID, description, units MPD:11602   NEUT   neutrophil count (NEUT; units per volume x 103)   [n/µL]
Data set, strains Graubert1   inbred   20 strains     sex: both     age: 9wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Graubert1 - neutrophil count (NEUT; units per volume x 103)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested20 strains20 strains
Mean of the strain means1.72   n/µL 2.24   n/µL
Median of the strain means1.78   n/µL 2.02   n/µL
SD of the strain means± 0.695 ± 0.890
Coefficient of variation (CV)0.403 0.398
Min–max range of strain means0.726   –   3.02   n/µL 0.945   –   3.90   n/µL
Mean sample size per strain11.9   mice 11.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 35.7574 35.7574 45.3394 < 0.0001
strain 19 253.1313 13.3227 16.8928 < 0.0001
sex:strain 19 26.8029 1.4107 1.7887 0.022
Residuals 422 332.8145 0.7887


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.74 0.594   12 0.171 0.341 0.48, 2.71 0.02
129S1/SvImJ m 3.41 1.65   12 0.476 0.484 1.17, 5.87 1.32
A/J f 0.932 0.363   12 0.105 0.389 0.49, 1.85 -1.14
A/J m 1.07 0.425   12 0.123 0.397 0.73, 2.25 -1.31
AKR/J f 2.88 1.17   12 0.338 0.407 1.09, 4.62 1.66
AKR/J m 3.1 1.38   12 0.398 0.446 1.18, 6.34 0.97
BALB/cByJ f 1.83 0.608   12 0.176 0.332 1.21, 3.03 0.15
BALB/cByJ m 2.09 0.892   12 0.258 0.427 1.09, 4.27 -0.17
C3H/HeJ f 1.82 0.612   12 0.177 0.336 0.73, 2.73 0.14
C3H/HeJ m 2.91 0.54   12 0.156 0.185 2.31, 4.0 0.76
C57BL/6J f 2.35 1.07   12 0.308 0.455 0.85, 3.94 0.9
C57BL/6J m 2.43 0.864   13 0.24 0.356 1.28, 3.98 0.22
C57L/J f 1.29 0.979   12 0.283 0.759 0.51, 2.98 -0.63
C57L/J m 1.41 1.09   12 0.313 0.772 0.48, 3.94 -0.93
C58/J f 1.89 0.489   12 0.141 0.258 1.14, 2.73 0.24
C58/J m 2.76 1.23   12 0.354 0.445 1.26, 4.99 0.59
CAST/EiJ f 0.917 0.558   12 0.161 0.608 0.26, 1.8 -1.16
CAST/EiJ m 1.08 0.419   12 0.121 0.389 0.41, 1.95 -1.3
DBA/2J f 1.57 0.657   11 0.198 0.419 0.54, 2.57 -0.22
DBA/2J m 1.58 0.958   9 0.319 0.606 0.8, 3.05 -0.74
FVB/NJ f 0.968 0.339   11 0.102 0.35 0.54, 1.46 -1.09
FVB/NJ m 0.945 0.476   12 0.138 0.504 0.46, 1.77 -1.45
MOLF/EiJ f 2.63 0.75   3 0.433 0.285 1.98, 3.45 1.3
MOLF/EiJ m 3.3 1.4   11 0.422 0.425 1.59, 5.84 1.19
NOD/ShiLtJ f 2.18 1.35   12 0.388 0.616 0.66, 5.72 0.65
NOD/ShiLtJ m 3.09 1.49   12 0.431 0.483 1.51, 7.24 0.96
NZB/BlNJ f 1.05 0.633   12 0.183 0.604 0.37, 2.07 -0.97
NZB/BlNJ m 1.51 0.7   12 0.202 0.464 0.7, 3.25 -0.82
PERA/EiJ f 3.02 1.02   12 0.294 0.337 1.39, 4.82 1.86
PERA/EiJ m 3.9 0.951   12 0.274 0.244 2.57, 6.05 1.87
PL/J f 2.4 0.674   12 0.195 0.281 0.96, 3.52 0.97
PL/J m 3.02 0.866   12 0.25 0.287 1.43, 4.61 0.88
SJL/J f 0.726 0.304   12 0.0878 0.419 0.38, 1.36 -1.44
SJL/J m 1.9 0.829   12 0.239 0.437 0.75, 3.33 -0.38
SM/J f 1.07 0.342   12 0.0988 0.32 0.6, 1.67 -0.94
SM/J m 1.6 0.981   12 0.283 0.613 0.84, 4.12 -0.72
SPRET/EiJ f 1.24 0.443   13 0.123 0.356 0.72, 2.12 -0.7
SPRET/EiJ m 1.95 0.474   7 0.179 0.243 1.38, 2.75 -0.32
SWR/J f 1.99 0.911   12 0.263 0.457 0.96, 3.52 0.38
SWR/J m 1.7 1.03   12 0.297 0.603 0.69, 4.4 -0.6


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.7392 0.2564 2.2431 1.2353
129S1/SvImJ m 3.4125 0.2564 3.9164 2.9086
A/J f 0.9325 0.2564 1.4364 0.4286
A/J m 1.0692 0.2564 1.5731 0.5653
AKR/J f 2.8825 0.2564 3.3864 2.3786
AKR/J m 3.0967 0.2564 3.6006 2.5928
BALB/cByJ f 1.8308 0.2564 2.3347 1.3269
BALB/cByJ m 2.0883 0.2564 2.5922 1.5844
C3H/HeJ f 1.8225 0.2564 2.3264 1.3186
C3H/HeJ m 2.9108 0.2564 3.4147 2.4069
C57BL/6J f 2.3458 0.2564 2.8497 1.8419
C57BL/6J m 2.4292 0.2463 2.9134 1.9451
C57L/J f 1.29 0.2564 1.7939 0.7861
C57L/J m 1.4058 0.2564 1.9097 0.9019
C58/J f 1.8933 0.2564 2.3972 1.3894
C58/J m 2.7567 0.2564 3.2606 2.2528
CAST/EiJ f 0.9175 0.2564 1.4214 0.4136
CAST/EiJ m 1.0775 0.2564 1.5814 0.5736
DBA/2J f 1.5673 0.2678 2.0936 1.041
DBA/2J m 1.58 0.296 2.1619 0.9981
FVB/NJ f 0.9682 0.2678 1.4945 0.4419
FVB/NJ m 0.945 0.2564 1.4489 0.4411
MOLF/EiJ f 2.63 0.5127 3.6378 1.6222
MOLF/EiJ m 3.3 0.2678 3.8263 2.7737
NOD/ShiLtJ f 2.1833 0.2564 2.6872 1.6794
NOD/ShiLtJ m 3.0942 0.2564 3.5981 2.5903
NZB/BlNJ f 1.0475 0.2564 1.5514 0.5436
NZB/BlNJ m 1.5083 0.2564 2.0122 1.0044
PERA/EiJ f 3.0167 0.2564 3.5206 2.5128
PERA/EiJ m 3.895 0.2564 4.3989 3.3911
PL/J f 2.4008 0.2564 2.9047 1.8969
PL/J m 3.0158 0.2564 3.5197 2.5119
SJL/J f 0.7258 0.2564 1.2297 0.2219
SJL/J m 1.8958 0.2564 2.3997 1.3919
SM/J f 1.0692 0.2564 1.5731 0.5653
SM/J m 1.5992 0.2564 2.1031 1.0953
SPRET/EiJ f 1.2431 0.2463 1.7272 0.7589
SPRET/EiJ m 1.9529 0.3357 2.6126 1.2931
SWR/J f 1.9908 0.2564 2.4947 1.4869
SWR/J m 1.7042 0.2564 2.2081 1.2003


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.5758 0.1813 2.9321 2.2195
A/J both 1.0008 0.1813 1.3571 0.6445
AKR/J both 2.9896 0.1813 3.3459 2.6333
BALB/cByJ both 1.9596 0.1813 2.3159 1.6033
C3H/HeJ both 2.3667 0.1813 2.723 2.0104
C57BL/6J both 2.3875 0.1778 2.7369 2.0381
C57L/J both 1.3479 0.1813 1.7042 0.9916
C58/J both 2.325 0.1813 2.6813 1.9687
CAST/EiJ both 0.9975 0.1813 1.3538 0.6412
DBA/2J both 1.5736 0.1996 1.9659 1.1813
FVB/NJ both 0.9566 0.1853 1.3209 0.5923
MOLF/EiJ both 2.965 0.2892 3.5335 2.3965
NOD/ShiLtJ both 2.6388 0.1813 2.9951 2.2824
NZB/BlNJ both 1.2779 0.1813 1.6342 0.9216
PERA/EiJ both 3.4558 0.1813 3.8121 3.0995
PL/J both 2.7083 0.1813 3.0646 2.352
SJL/J both 1.3108 0.1813 1.6671 0.9545
SM/J both 1.3342 0.1813 1.6905 0.9779
SPRET/EiJ both 1.598 0.2082 2.0071 1.1888
SWR/J both 1.8475 0.1813 2.2038 1.4912




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.