Project measure / variable:   Graubert1   WBC

ID, description, units MPD:11601   WBC   white blood cell count (WBC; per volume x 103)   [n/µL]  
Data set, strains Graubert1   inbred   20 strains     sex: both     age: 9wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Graubert1 - white blood cell count (WBC; per volume x 103)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested20 strains20 strains
Mean of the strain means7.21   n/µL 8.43   n/µL
Median of the strain means6.86   n/µL 8.35   n/µL
SD of the strain means± 2.32 ± 2.25
Coefficient of variation (CV)0.322 0.267
Min–max range of strain means3.20   –   11.6   n/µL 4.09   –   11.8   n/µL
Mean sample size per strain11.9   mice 11.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 198.0321 198.0321 34.8516 < 0.0001
strain 19 2071.9321 109.0491 19.1915 < 0.0001
sex:strain 19 292.9331 15.4175 2.7133 0.0001
Residuals 422 2397.8682 5.6822


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 6.9 1.61   12 0.464 0.233 3.56, 9.06 -0.14
129S1/SvImJ m 10.3 2.32   12 0.671 0.225 6.24, 12.9 0.83
A/J f 5.24 1.58   12 0.456 0.301 2.88, 7.48 -0.85
A/J m 5.6 1.5   12 0.432 0.267 3.68, 8.58 -1.26
AKR/J f 10.0 3.27   12 0.944 0.327 5.12, 14.5 1.2
AKR/J m 9.79 1.91   12 0.55 0.195 6.52, 13.9 0.61
BALB/cByJ f 8.8 1.52   12 0.439 0.173 6.22, 10.8 0.68
BALB/cByJ m 9.74 1.49   12 0.43 0.153 7.14, 12.1 0.58
C3H/HeJ f 5.86 1.98   12 0.572 0.338 3.26, 10.0 -0.58
C3H/HeJ m 8.77 2.5   12 0.723 0.286 5.4, 13.6 0.15
C57BL/6J f 9.32 2.79   12 0.806 0.3 5.4, 14.9 0.91
C57BL/6J m 7.57 1.73   13 0.481 0.229 4.56, 10.7 -0.38
C57L/J f 6.81 1.65   12 0.476 0.242 4.38, 8.98 -0.17
C57L/J m 7.68 2.7   12 0.778 0.351 5.42, 15.1 -0.33
C58/J f 7.66 1.32   12 0.381 0.172 4.92, 9.7 0.19
C58/J m 10.8 3.45   12 0.995 0.32 7.2, 19.7 1.06
CAST/EiJ f 5.09 2.37   12 0.685 0.466 1.4, 8.2 -0.91
CAST/EiJ m 6.21 2.29   12 0.66 0.368 2.38, 10.3 -0.99
DBA/2J f 6.35 1.89   11 0.569 0.297 4.34, 9.9 -0.37
DBA/2J m 7.53 3.34   9 1.11 0.443 3.68, 13.1 -0.4
FVB/NJ f 6.88 1.97   11 0.595 0.287 4.36, 9.98 -0.14
FVB/NJ m 6.69 1.92   12 0.553 0.286 4.78, 10.7 -0.77
MOLF/EiJ f 8.35 2.46   3 1.42 0.294 6.36, 11.1 0.49
MOLF/EiJ m 9.77 3.33   11 1.0 0.341 5.1, 15.7 0.6
NOD/ShiLtJ f 6.03 2.1   12 0.608 0.349 1.74, 9.32 -0.51
NOD/ShiLtJ m 7.93 2.24   12 0.646 0.282 3.94, 13.1 -0.22
NZB/BlNJ f 3.2 1.44   12 0.416 0.451 1.68, 6.16 -1.73
NZB/BlNJ m 4.09 1.92   12 0.554 0.469 2.22, 9.44 -1.93
PERA/EiJ f 10.9 2.33   12 0.674 0.214 7.24, 14.2 1.59
PERA/EiJ m 11.8 1.93   12 0.556 0.163 9.1, 15.1 1.5
PL/J f 9.82 2.88   12 0.831 0.293 3.88, 16.0 1.12
PL/J m 10.7 2.74   12 0.791 0.256 5.98, 16.6 1.01
SJL/J f 6.83 2.53   12 0.731 0.371 3.64, 11.0 -0.17
SJL/J m 11.8 2.84   12 0.82 0.24 7.8, 16.4 1.5
SM/J f 3.69 1.28   12 0.369 0.347 1.94, 5.88 -1.52
SM/J m 5.19 1.64   12 0.472 0.316 3.16, 8.52 -1.44
SPRET/EiJ f 4.94 1.7   13 0.472 0.344 1.8, 8.7 -0.98
SPRET/EiJ m 6.56 1.67   7 0.632 0.255 4.48, 8.84 -0.83
SWR/J f 11.6 3.71   12 1.07 0.319 5.16, 17.6 1.89
SWR/J m 10.0 4.85   12 1.4 0.483 4.3, 18.9 0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 6.8983 0.6881 8.2509 5.5458
129S1/SvImJ m 10.335 0.6881 11.6876 8.9824
A/J f 5.2417 0.6881 6.5942 3.8891
A/J m 5.6 0.6881 6.9526 4.2474
AKR/J f 10.0167 0.6881 11.3692 8.6641
AKR/J m 9.7933 0.6881 11.1459 8.4408
BALB/cByJ f 8.7983 0.6881 10.1509 7.4458
BALB/cByJ m 9.7367 0.6881 11.0892 8.3841
C3H/HeJ f 5.865 0.6881 7.2176 4.5124
C3H/HeJ m 8.7717 0.6881 10.1242 7.4191
C57BL/6J f 9.3217 0.6881 10.6742 7.9691
C57BL/6J m 7.5723 0.6611 8.8718 6.2728
C57L/J f 6.8133 0.6881 8.1659 5.4608
C57L/J m 7.6833 0.6881 9.0359 6.3308
C58/J f 7.6583 0.6881 9.0109 6.3058
C58/J m 10.7767 0.6881 12.1292 9.4241
CAST/EiJ f 5.0933 0.6881 6.4459 3.7408
CAST/EiJ m 6.21 0.6881 7.5626 4.8574
DBA/2J f 6.3473 0.7187 7.76 4.9346
DBA/2J m 7.5267 0.7946 9.0885 5.9648
FVB/NJ f 6.88 0.7187 8.2927 5.4673
FVB/NJ m 6.6933 0.6881 8.0459 5.3408
MOLF/EiJ f 8.3533 1.3762 11.0585 5.6482
MOLF/EiJ m 9.7727 0.7187 11.1854 8.36
NOD/ShiLtJ f 6.03 0.6881 7.3826 4.6774
NOD/ShiLtJ m 7.9333 0.6881 9.2859 6.5808
NZB/BlNJ f 3.1983 0.6881 4.5509 1.8458
NZB/BlNJ m 4.0933 0.6881 5.4459 2.7408
PERA/EiJ f 10.88 0.6881 12.2326 9.5274
PERA/EiJ m 11.8267 0.6881 13.1792 10.4741
PL/J f 9.8167 0.6881 11.1692 8.4641
PL/J m 10.7167 0.6881 12.0692 9.3641
SJL/J f 6.8317 0.6881 8.1842 5.4791
SJL/J m 11.845 0.6881 13.1976 10.4924
SM/J f 3.6883 0.6881 5.0409 2.3358
SM/J m 5.1867 0.6881 6.5392 3.8341
SPRET/EiJ f 4.9385 0.6611 6.238 3.6389
SPRET/EiJ m 6.56 0.901 8.3309 4.7891
SWR/J f 11.645 0.6881 12.9976 10.2924
SWR/J m 10.035 0.6881 11.3876 8.6824


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 8.6167 0.4866 9.5731 7.6603
A/J both 5.4208 0.4866 6.3772 4.4644
AKR/J both 9.905 0.4866 10.8614 8.9486
BALB/cByJ both 9.2675 0.4866 10.2239 8.3111
C3H/HeJ both 7.3183 0.4866 8.2747 6.3619
C57BL/6J both 8.447 0.4771 9.3848 7.5091
C57L/J both 7.2483 0.4866 8.2047 6.2919
C58/J both 9.2175 0.4866 10.1739 8.2611
CAST/EiJ both 5.6517 0.4866 6.6081 4.6953
DBA/2J both 6.937 0.5357 7.9899 5.884
FVB/NJ both 6.7867 0.4975 7.7646 5.8088
MOLF/EiJ both 9.063 0.7763 10.5889 7.5371
NOD/ShiLtJ both 6.9817 0.4866 7.9381 6.0253
NZB/BlNJ both 3.6458 0.4866 4.6022 2.6894
PERA/EiJ both 11.3533 0.4866 12.3097 10.3969
PL/J both 10.2667 0.4866 11.2231 9.3103
SJL/J both 9.3383 0.4866 10.2947 8.3819
SM/J both 4.4375 0.4866 5.3939 3.4811
SPRET/EiJ both 5.7492 0.5588 6.8475 4.6509
SWR/J both 10.84 0.4866 11.7964 9.8836




  GWAS USING LINEAR MIXED MODELS