Project measure / variable:   Bennett4   Y_ave_HFHS

ID, description, units MPD:114888   Y_ave_HFHS   activity on y-axis total (beam breaks), average for day and night   [n]  HFHS group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 17-20wks
Procedure monitoring system
Ontology mappings

  STRAIN COMPARISON PLOT
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Bennett4 - activity on y-axis total (beam breaks), average for day and night HFHS group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means974.0   n
Median of the strain means926.6   n
SD of the strain means± 374.0
Coefficient of variation (CV)0.384
Min–max range of strain means595.1   –   2111.0   n
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 13109684.6377 624270.697 2.2793 0.0049
Residuals 76 20815664.9072 273890.3277


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 670.6 152.0   5 67.97 0.2267 484.2, 884.8 -0.81
CC002/Unc f 815.1 180.8   5 80.88 0.2219 599.6, 1085.0 -0.42
CC004/TauUnc f 1723.0 800.9   5 358.2 0.4647 1077.0, 3118.0 2.0
CC006/TauUnc f 993.3 72.46   4 36.228 0.0729 913.4, 1079.0 0.05
CC008/GeniUnc f 768.0 192.9   4 96.44 0.2511 549.6, 936.4 -0.55
CC011/Unc f 1165.0 614.6   5 274.8 0.5276 638.6, 2227.0 0.51
CC012/GeniUnc f 623.1 93.94   4 46.969 0.1508 540.8, 755.9 -0.94
CC019/TauUnc f 744.0 78.41   5 35.067 0.1054 607.4, 796.6 -0.61
CC024/GeniUnc f 1091.0 29.698   2   21.0 0.0272 1070.0, 1112.0 0.31
CC027/GeniUnc f 1475.0 213.9   5 95.64 0.145 1255.0, 1730.0 1.34
CC028/GeniUnc f 721.0 113.2   4 56.62 0.1571 573.1, 810.5 -0.68
CC030/GeniUnc f 699.8 148.8   5 66.55 0.2127 580.6, 959.3 -0.73
CC032/GeniUnc f 950.5 129.3   5 57.81 0.136 760.2, 1085.0 -0.06
CC035/Unc f 758.4 163.9   5 73.28 0.2161 598.3, 1034.0 -0.58
CC036/Unc f 950.7 217.3   5 97.19 0.2286 643.5, 1171.0 -0.06
CC037/TauUnc f 902.7 301.6   5 134.9 0.3341 404.7, 1174.0 -0.19
CC040/TauUnc f 957.1 202.3   4 101.2 0.2114 671.7, 1111.0 -0.05
CC041/TauUnc f 595.1 254.3   5 113.7 0.4273 259.2, 923.6 -1.01
CC045/GeniUnc f 2111.0 2200.0   4 1100.0 1.0423 979.5, 5411.0 3.04
CC059/TauUnc f 660.1 260.8   5 116.6 0.395 280.0, 870.6 -0.84
CC063/Unc f 966.7 182.0   3 105.1 0.1883 811.4, 1167.0 -0.02
CC071/TauUnc f 1086.0 137.8   4 68.88 0.1268 919.9, 1214.0 0.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 670.58 234.0471438518 1136.7252857752 204.4347142249
CC002/Unc f 815.06 234.0471438518 1281.2052857752 348.9147142248
CC004/TauUnc f 1723.4 234.0471438518 2189.5452857751 1257.2547142248
CC006/TauUnc f 993.275 261.6726617961 1514.4412731922 472.1087268078
CC008/GeniUnc f 767.975 261.6726617961 1289.1412731922 246.8087268078
CC011/Unc f 1164.76 234.0471438518 1630.9052857752 698.6147142248
CC012/GeniUnc f 623.075 261.6726617961 1144.2412731922 101.9087268078
CC019/TauUnc f 744.04 234.0471438518 1210.1852857752 277.8947142248
CC024/GeniUnc f 1091.0 370.0610272143 1828.0404117998 353.9595882002
CC027/GeniUnc f 1475.2 234.0471438518 1941.3452857752 1009.0547142248
CC028/GeniUnc f 720.975 261.6726617961 1242.1412731922 199.8087268078
CC030/GeniUnc f 699.82 234.0471438518 1165.9652857752 233.6747142248
CC032/GeniUnc f 950.46 234.0471438518 1416.6052857752 484.3147142248
CC035/Unc f 758.4 234.0471438518 1224.5452857752 292.2547142248
CC036/Unc f 950.74 234.0471438518 1416.8852857752 484.5947142248
CC037/TauUnc f 902.68 234.0471438518 1368.8252857752 436.5347142248
CC040/TauUnc f 957.125 261.6726617961 1478.2912731922 435.9587268078
CC041/TauUnc f 595.06 234.0471438518 1061.2052857752 128.9147142248
CC045/GeniUnc f 2110.875 261.6726617961 2632.0412731922 1589.7087268078
CC059/TauUnc f 660.14 234.0471438518 1126.2852857752 193.9947142248
CC063/Unc f 966.6666666667 302.1535634551 1568.4576429068 364.8756904266
CC071/TauUnc f 1086.475 261.6726617961 1607.6412731922 565.3087268078




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA