Project measure / variable:   Bennett4   Y_night_HP

ID, description, units MPD:114885   Y_night_HP   activity on y-axis total (beam breaks), night   [n]  HP group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 17-20wks
Procedure monitoring system
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  STRAIN COMPARISON PLOT
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Bennett4 - activity on y-axis total (beam breaks), night HP group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means1359.0   n
Median of the strain means1150.0   n
SD of the strain means± 890.8
Coefficient of variation (CV)0.6557
Min–max range of strain means683.2   –   5095.0   n
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 82778167.9745 3941817.5226 15.1224 < 0.0001
Residuals 78 20331611.7091 260661.6886


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 1114.0 177.5   5 79.38 0.1593 946.6, 1360.0 -0.27
CC002/Unc f 808.8 162.7   5 72.75 0.2011 627.1, 1030.0 -0.62
CC004/TauUnc f 5095.0 1889.0   5 844.9 0.3708 3271.0, 7411.0 4.19
CC006/TauUnc f 1875.0 150.8   4 75.39 0.0804 1665.0, 2022.0 0.58
CC008/GeniUnc f 1262.0 369.0   4 184.5 0.2923 764.7, 1655.0 -0.11
CC011/Unc f 1137.0 455.2   5 203.6 0.4003 622.6, 1832.0 -0.25
CC012/GeniUnc f 684.6 29.697   5 13.281 0.0434 642.7, 716.9 -0.76
CC019/TauUnc f 1145.0 128.8   5 57.62 0.1125 953.6, 1276.0 -0.24
CC024/GeniUnc f 1204.0 300.9   2   212.8 0.2499 991.4, 1417.0 -0.17
CC027/GeniUnc f 1914.0 403.3   5 180.4 0.2107 1650.0, 2618.0 0.62
CC028/GeniUnc f 947.9 83.44   4 41.719 0.088 887.1, 1067.0 -0.46
CC030/GeniUnc f 683.2 453.5   5 202.8 0.6639 93.76, 1239.0 -0.76
CC032/GeniUnc f 1065.0 148.7   5 66.5 0.1396 895.4, 1224.0 -0.33
CC035/Unc f 1099.0 346.6   5 155.0 0.3153 711.7, 1489.0 -0.29
CC036/Unc f 1406.0 352.2   4 176.1 0.2504 914.2, 1675.0 0.05
CC037/TauUnc f 1156.0 140.0   5 62.6 0.1211 971.3, 1323.0 -0.23
CC040/TauUnc f 1345.0 326.7   5 146.1 0.2429 945.8, 1805.0 -0.02
CC041/TauUnc f 923.9 318.1   5 142.3 0.3443 526.5, 1268.0 -0.49
CC045/GeniUnc f 1483.0 338.8   4 169.4 0.2284 1102.0, 1846.0 0.14
CC059/TauUnc f 1009.0 199.4   5 89.17 0.1975 727.1, 1231.0 -0.39
CC063/Unc f 1360.0 181.9   3 105.0 0.1337 1150.0, 1467.0 0.0
CC071/TauUnc f 1170.0 332.5   5 148.7 0.2842 611.4, 1479.0 -0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 1114.14 228.3250702739 1568.700296891 659.5797031089
CC002/Unc f 808.78 228.3250702739 1263.3402968911 354.2197031089
CC004/TauUnc f 5094.8 228.3250702739 5549.3602968911 4640.239703109
CC006/TauUnc f 1875.25 255.2751890499 2383.4638618604 1367.0361381396
CC008/GeniUnc f 1262.425 255.2751890499 1770.6388618604 754.2111381396
CC011/Unc f 1137.06 228.3250702739 1591.6202968911 682.4997031089
CC012/GeniUnc f 684.6 228.3250702739 1139.1602968911 230.0397031089
CC019/TauUnc f 1145.32 228.3250702739 1599.8802968911 690.7597031089
CC024/GeniUnc f 1204.2 361.0136344918 1922.922936029 485.477063971
CC027/GeniUnc f 1914.4 228.3250702739 2368.9602968911 1459.8397031089
CC028/GeniUnc f 947.925 255.2751890499 1456.1388618604 439.7111381396
CC030/GeniUnc f 683.152 228.3250702739 1137.7122968911 228.5917031089
CC032/GeniUnc f 1065.08 228.3250702739 1519.6402968911 610.5197031089
CC035/Unc f 1099.24 228.3250702739 1553.8002968911 644.6797031089
CC036/Unc f 1406.3 255.2751890499 1914.5138618604 898.0861381396
CC037/TauUnc f 1156.26 228.3250702739 1610.8202968911 701.6997031089
CC040/TauUnc f 1344.76 228.3250702739 1799.3202968911 890.1997031089
CC041/TauUnc f 923.94 228.3250702739 1378.5002968911 469.3797031089
CC045/GeniUnc f 1483.25 255.2751890499 1991.4638618604 975.0361381396
CC059/TauUnc f 1009.38 228.3250702739 1463.9402968911 554.8197031089
CC063/Unc f 1360.0 294.7663982308 1946.834819902 773.1651800979
CC071/TauUnc f 1170.28 228.3250702739 1624.8402968911 715.7197031089




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA