Project measure / variable:   Bennett4   Y_day_HP

ID, description, units MPD:114883   Y_day_HP   activity on y-axis total (beam breaks), day   [n]  HP group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 17-20wks
Procedure monitoring system
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  STRAIN COMPARISON PLOT
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Bennett4 - activity on y-axis total (beam breaks), day HP group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means572.7   n
Median of the strain means492.2   n
SD of the strain means± 224.2
Coefficient of variation (CV)0.3915
Min–max range of strain means239.9   –   1248.0   n
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 5019005.0351 239000.2398 4.4139 < 0.0001
Residuals 78 4223466.3859 54147.0049


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 483.2 121.6   5 54.36 0.2516 324.1, 628.5 -0.4
CC002/Unc f 543.7 77.21   5 34.527 0.142 470.9, 642.7 -0.13
CC004/TauUnc f 1248.0 723.3   5 323.5 0.5796 603.5, 2324.0 3.01
CC006/TauUnc f 675.1 161.6   4 80.81 0.2394 534.7, 867.2 0.46
CC008/GeniUnc f 765.4 169.7   4 84.84 0.2217 565.4, 960.2 0.86
CC011/Unc f 607.4 343.6   5 153.6 0.5657 83.29, 1001.0 0.15
CC012/GeniUnc f 386.5 85.7   5 38.327 0.2217 277.0, 509.4 -0.83
CC019/TauUnc f 447.1 65.12   5 29.122 0.1457 366.5, 515.4 -0.56
CC024/GeniUnc f 427.4 156.4   2   110.6 0.366 316.8, 538.0 -0.65
CC027/GeniUnc f 828.1 275.0   5 123.0 0.3321 564.8, 1289.0 1.14
CC028/GeniUnc f 482.0 51.17   4 25.583 0.1061 406.9, 521.3 -0.4
CC030/GeniUnc f 239.9 192.1   5 85.91 0.8008 -1.48
CC032/GeniUnc f 811.6 197.2   5 88.21 0.243 572.5, 1103.0 1.07
CC035/Unc f 493.1 139.1   5 62.19 0.282 343.6, 700.8 -0.35
CC036/Unc f 509.1 36.61   4 18.305 0.0719 460.0, 548.4 -0.28
CC037/TauUnc f 446.7 152.8   5 68.32 0.342 322.2, 699.9 -0.56
CC040/TauUnc f 448.6 130.0   5 58.12 0.2897 360.8, 675.6 -0.55
CC041/TauUnc f 362.4 93.96   5 42.02 0.2592 257.6, 514.6 -0.94
CC045/GeniUnc f 922.1 246.8   4 123.4 0.2677 676.1, 1263.0 1.56
CC059/TauUnc f 470.2 104.7   5 46.816 0.2226 319.4, 559.4 -0.46
CC063/Unc f 491.4 67.61   3 39.032 0.1376 428.5, 562.9 -0.36
CC071/TauUnc f 509.3 231.0   5 103.3 0.4536 178.6, 802.5 -0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 483.2 104.0644078905 690.3763214165 276.0236785835
CC002/Unc f 543.72 104.0644078905 750.8963214165 336.5436785835
CC004/TauUnc f 1247.96 104.0644078905 1455.1363214165 1040.7836785835
CC006/TauUnc f 675.075 116.3475450407 906.7051690078 443.4448309922
CC008/GeniUnc f 765.375 116.3475450407 997.0051690078 533.7448309922
CC011/Unc f 607.358 104.0644078905 814.5343214165 400.1816785835
CC012/GeniUnc f 386.52 104.0644078905 593.6963214165 179.3436785835
CC019/TauUnc f 447.06 104.0644078905 654.2363214165 239.8836785835
CC024/GeniUnc f 427.4 164.5402761454 754.9745264656 99.8254735344
CC027/GeniUnc f 828.1 104.0644078905 1035.2763214165 620.9236785835
CC028/GeniUnc f 482.025 116.3475450407 713.6551690078 250.3948309922
CC030/GeniUnc f 239.9 104.0644078905 447.0763214165 32.7236785835
CC032/GeniUnc f 811.56 104.0644078905 1018.7363214165 604.3836785835
CC035/Unc f 493.14 104.0644078905 700.3163214165 285.9636785835
CC036/Unc f 509.075 116.3475450407 740.7051690078 277.4448309922
CC037/TauUnc f 446.7 104.0644078905 653.8763214165 239.5236785835
CC040/TauUnc f 448.6 104.0644078905 655.7763214165 241.4236785835
CC041/TauUnc f 362.44 104.0644078905 569.6163214165 155.2636785835
CC045/GeniUnc f 922.1 116.3475450407 1153.7301690078 690.4698309922
CC059/TauUnc f 470.24 104.0644078905 677.4163214165 263.0636785835
CC063/Unc f 491.4333333333 134.3465728977 758.8968141915 223.9698524751
CC071/TauUnc f 509.28 104.0644078905 716.4563214165 302.1036785835




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA