Project measure / variable:   Bennett4   X_day_HFHS

ID, description, units MPD:114866   X_day_HFHS   activity on x-axis total (beam breaks), day   [n]  HFHS group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 17-20wks
Procedure monitoring system
Ontology mappings

  STRAIN COMPARISON PLOT
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Bennett4 - activity on x-axis total (beam breaks), day HFHS group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means555.7   n
Median of the strain means525.6   n
SD of the strain means± 198.9
Coefficient of variation (CV)0.358
Min–max range of strain means254.7   –   1065.0   n
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 3610271.1109 171917.6719 2.4006 0.003
Residuals 76 5442700.3708 71614.4786


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 546.6 155.7   5 69.64 0.2849 383.1, 754.5 -0.05
CC002/Unc f 558.2 95.24   5 42.593 0.1706 476.0, 707.1 0.01
CC004/TauUnc f 749.1 330.7   5 147.9 0.4415 284.6, 1111.0 0.97
CC006/TauUnc f 358.8 196.0   4 98.02 0.5464 89.35, 555.3 -0.99
CC008/GeniUnc f 651.4 345.9   4 172.9 0.531 207.8, 976.7 0.48
CC011/Unc f 626.4 299.4   5 133.9 0.4779 342.8, 1120.0 0.36
CC012/GeniUnc f 420.8 37.301   4 18.65 0.0886 368.8, 452.1 -0.68
CC019/TauUnc f 472.0 134.0   5 59.92 0.2839 242.0, 583.5 -0.42
CC024/GeniUnc f 589.2 132.0   2   93.35 0.224 495.9, 682.6 0.17
CC027/GeniUnc f 1010.0 121.9   5 54.53 0.1207 803.9, 1117.0 2.28
CC028/GeniUnc f 409.1 147.8   4 73.9 0.3613 187.9, 493.6 -0.74
CC030/GeniUnc f 398.9 113.9   5 50.95 0.2856 314.7, 587.8 -0.79
CC032/GeniUnc f 657.9 217.1   5 97.11 0.3301 486.2, 1015.0 0.51
CC035/Unc f 504.6 224.5   5 100.4 0.445 212.5, 795.6 -0.26
CC036/Unc f 480.0 230.5   5 103.1 0.4801 141.6, 705.7 -0.38
CC037/TauUnc f 446.1 276.0   5 123.4 0.6186 76.65, 690.2 -0.55
CC040/TauUnc f 618.8 240.2   4 120.1 0.3882 268.8, 806.7 0.32
CC041/TauUnc f 333.9 205.1   5 91.72 0.6141 55.29, 579.0 -1.11
CC045/GeniUnc f 1065.0 855.8   4 427.9 0.8037 442.0, 2321.0 2.56
CC059/TauUnc f 420.4 241.1   5 107.8 0.5736 122.5, 669.4 -0.68
CC063/Unc f 254.7 132.0   3 76.24 0.5184 135.1, 396.4 -1.51
CC071/TauUnc f 652.8 135.7   4 67.85 0.2079 510.7, 830.1 0.49


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 546.62 119.6783009259 784.979993923 308.260006077
CC002/Unc f 558.22 119.6783009259 796.579993923 319.860006077
CC004/TauUnc f 749.08 119.6783009259 987.4399939229 510.720006077
CC006/TauUnc f 358.8125 133.804408151 625.3070747641 92.3179252359
CC008/GeniUnc f 651.35 133.804408151 917.8445747641 384.8554252359
CC011/Unc f 626.44 119.6783009259 864.799993923 388.080006077
CC012/GeniUnc f 420.8 133.804408151 687.2945747641 154.3054252359
CC019/TauUnc f 472.04 119.6783009259 710.399993923 233.680006077
CC024/GeniUnc f 589.25 189.2280087125 966.1302419302 212.3697580698
CC027/GeniUnc f 1010.38 119.6783009259 1248.7399939229 772.020006077
CC028/GeniUnc f 409.1 133.804408151 675.5945747641 142.6054252359
CC030/GeniUnc f 398.88 119.6783009259 637.239993923 160.520006077
CC032/GeniUnc f 657.86 119.6783009259 896.219993923 419.500006077
CC035/Unc f 504.56 119.6783009259 742.919993923 266.200006077
CC036/Unc f 480.02 119.6783009259 718.379993923 241.660006077
CC037/TauUnc f 446.15 119.6783009259 684.509993923 207.790006077
CC040/TauUnc f 618.8 133.804408151 885.2945747641 352.3054252359
CC041/TauUnc f 333.938 119.6783009259 572.297993923 95.578006077
CC045/GeniUnc f 1064.925 133.804408151 1331.4195747641 798.4304252359
CC059/TauUnc f 420.42 119.6783009259 658.779993923 182.060006077
CC063/Unc f 254.7 154.5040221295 562.4214289552 -53.0214289552
CC071/TauUnc f 652.825 133.804408151 919.3195747641 386.3304252359




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA