Project measure / variable:   Bennett4   GPC_post_HP

ID, description, units MPD:114785   GPC_post_HP   plasma glycerophosphocholine amount, post-diet   [µM]  HP group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 17-20wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Bennett4 - plasma glycerophosphocholine amount, post-diet HP group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means48.241   µM
Median of the strain means49.38   µM
SD of the strain means± 10.415
Coefficient of variation (CV)0.2159
Min–max range of strain means22.75   –   62.3   µM
Mean sample size per strain4.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 9347.4415 445.1163 2.0061 0.0153
Residuals 74 16419.111 221.8799


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 61.98 29.078   5 13.004 0.4692 22.0, 103.7 1.32
CC002/Unc f 43.62 10.942   5 4.8936 0.2509 30.2, 59.3 -0.44
CC004/TauUnc f 47.24 4.2489   5 1.9002 0.0899 43.7, 53.6 -0.1
CC006/TauUnc f 27.475 13.27   4 6.6349 0.483 15.1, 43.8 -1.99
CC008/GeniUnc f 50.2 10.964   4 5.4822 0.2184 36.8, 61.7 0.19
CC011/Unc f 50.38 6.5358   5 2.9229 0.1297 43.7, 58.7 0.21
CC012/GeniUnc f 52.3 9.5478   5 4.2699 0.1826 38.6, 65.2 0.39
CC019/TauUnc f 50.4 13.104   4 6.5522 0.26 36.1, 67.8 0.21
CC024/GeniUnc f 35.6 3.9598   2   2.8 0.1112 32.8, 38.4 -1.21
CC027/GeniUnc f 48.025 16.77   4 8.3849 0.3492 27.7, 63.6 -0.02
CC028/GeniUnc f 53.75 16.893   4 8.4465 0.3143 36.8, 75.8 0.53
CC030/GeniUnc f 61.16 18.319   5 8.1925 0.2995 41.8, 86.6 1.24
CC032/GeniUnc f 46.17 8.3682   5 3.7424 0.1812 35.8, 55.3 -0.2
CC035/Unc f 36.3 10.373   5 4.639 0.2858 20.2, 48.6 -1.15
CC036/Unc f 22.75 11.801   4 5.9004 0.5187 8.5, 32.5 -2.45
CC037/TauUnc f 55.72 17.739   5 7.9332 0.3184 38.4, 85.3 0.72
CC040/TauUnc f 45.8 10.368   3 5.9858 0.2264 35.1, 55.8 -0.23
CC041/TauUnc f 48.56 12.32   5 5.5095 0.2537 34.0, 66.8 0.03
CC045/GeniUnc f 46.1 5.7324   4 2.8662 0.1243 38.8, 51.8 -0.21
CC059/TauUnc f 59.66 24.232   5 10.837 0.4062 35.2, 86.6 1.1
CC063/Unc f 62.3 10.355   3 5.9786 0.1662 51.2, 71.7 1.35
CC071/TauUnc f 55.82 20.109   5 8.9929 0.3602 25.0, 74.8 0.73


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 61.98 6.6615295297 75.2533873325 48.7066126675
CC002/Unc f 43.62 6.6615295297 56.8933873325 30.3466126675
CC004/TauUnc f 47.24 6.6615295297 60.5133873325 33.9666126675
CC006/TauUnc f 27.475 7.4478164313 42.3150981835 12.6349018165
CC008/GeniUnc f 50.2 7.4478164313 65.0400981835 35.3599018165
CC011/Unc f 50.38 6.6615295297 63.6533873325 37.1066126675
CC012/GeniUnc f 52.3 6.6615295297 65.5733873325 39.0266126675
CC019/TauUnc f 50.4 7.4478164313 65.2400981835 35.5599018165
CC024/GeniUnc f 35.6 10.5328030072 56.5870681181 14.6129318819
CC027/GeniUnc f 48.025 7.4478164313 62.8650981835 33.1849018165
CC028/GeniUnc f 53.75 7.4478164313 68.5900981835 38.9099018165
CC030/GeniUnc f 61.16 6.6615295297 74.4333873325 47.8866126675
CC032/GeniUnc f 46.17 6.6615295297 59.4433873325 32.8966126675
CC035/Unc f 36.3 6.6615295297 49.5733873325 23.0266126675
CC036/Unc f 22.75 7.4478164313 37.5900981835 7.9099018165
CC037/TauUnc f 55.72 6.6615295297 68.9933873325 42.4466126675
CC040/TauUnc f 45.8 8.599997643 62.9358693621 28.6641306379
CC041/TauUnc f 48.56 6.6615295297 61.8333873325 35.2866126675
CC045/GeniUnc f 46.1 7.4478164313 60.9400981835 31.2599018165
CC059/TauUnc f 59.66 6.6615295297 72.9333873325 46.3866126675
CC063/Unc f 62.3 8.599997643 79.4358693621 45.1641306379
CC071/TauUnc f 55.82 6.6615295297 69.0933873325 42.5466126675




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA