Project measure / variable:   Bennett4   PC_post_HFHS

ID, description, units MPD:114780   PC_post_HFHS   plasma phosphocholine amount, post-diet   [µM]  HFHS group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 17-20wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Bennett4 - plasma phosphocholine amount, post-diet HFHS group

CC008/GeniUncCC004/TauUncCC027/GeniUncCC041/TauUncCC002/UncCC040/TauUncCC037/TauUncCC006/TauUncCC011/UncCC035/UncCC059/TauUncCC045/GeniUncCC001/UncCC036/UncCC012/GeniUncCC071/TauUncCC019/TauUncCC024/GeniUncCC063/UncCC028/GeniUncCC030/GeniUncCC032/GeniUnc µM 3.03.54.04.55.05.56.06.57.07.58.08.59.0femalemale


  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means5.438   µM
Median of the strain means5.5   µM
SD of the strain means± 0.81
Coefficient of variation (CV)0.149
Min–max range of strain means3.86   –   6.9   µM
Mean sample size per strain4.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 58.7138 2.7959 1.9636 0.0185
Residuals 72 102.5163 1.4238


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 22 (22)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
CC001/Unc f 5.39 1.004   5 0.449 0.1863 4.2, 6.3 -0.06
CC002/Unc f 6.25 0.61373   4 0.30687 0.0982 5.5, 6.8 1.0
CC004/TauUnc f 6.44 0.58566   5 0.26192 0.0909 5.6, 7.2 1.24
CC006/TauUnc f 5.95 1.6176   4 0.80881 0.2719 4.6, 8.3 0.63
CC008/GeniUnc f 6.9 0.8124   4 0.4062 0.1177 6.2, 7.7 1.8
CC011/Unc f 5.68 1.1278   5 0.50438 0.1986 4.5, 6.9 0.3
CC012/GeniUnc f 4.96 0.87636   5 0.39192 0.1767 4.2, 6.1 -0.59
CC019/TauUnc f 4.9 0.95394   5 0.42661 0.1947 3.2, 5.4 -0.66
CC024/GeniUnc f 4.65 0.07071   2   0.05 0.0152 4.6, 4.7 -0.97
CC027/GeniUnc f 6.36 1.6562   5 0.74068 0.2604 4.8, 8.8 1.14
CC028/GeniUnc f 4.5 0.0   3 0.0 0.0 4.5, 4.5 -1.16
CC030/GeniUnc f 4.26 0.86197   5 0.38549 0.2023 3.0, 5.3 -1.45
CC032/GeniUnc f 3.86 0.49295   5 0.22045 0.1277 3.1, 4.4 -1.95
CC035/Unc f 5.6 1.291   4 0.6455 0.2305 4.1, 7.1 0.2
CC036/Unc f 5.0 0.79057   5 0.35355 0.1581 3.6, 5.5 -0.54
CC037/TauUnc f 6.02 1.2834   5 0.57393 0.2132 4.7, 7.4 0.72
CC040/TauUnc f 6.15 1.9018   4 0.95088 0.3092 5.1, 9.0 0.88
CC041/TauUnc f 6.3 2.429   4 1.2145 0.3856 3.6, 8.5 1.06
CC045/GeniUnc f 5.4 1.6083   4 0.80416 0.2978 4.4, 7.8 -0.05
CC059/TauUnc f 5.6 0.79057   5 0.35355 0.1412 4.6, 6.8 0.2
CC063/Unc f 4.5333 0.40415   3 0.23333 0.0891 4.1, 4.9 -1.12
CC071/TauUnc f 4.9333 1.7616   3 1.0171 0.3571 3.5, 6.9 -0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 5.39 0.5336361987 6.45378432 4.32621568
CC002/Unc f 6.25 0.5966234078 7.4393470265 5.0606529735
CC004/TauUnc f 6.44 0.5336361987 7.50378432 5.37621568
CC006/TauUnc f 5.95 0.5966234078 7.1393470265 4.7606529735
CC008/GeniUnc f 6.9 0.5966234078 8.0893470265 5.7106529735
CC011/Unc f 5.68 0.5336361987 6.74378432 4.61621568
CC012/GeniUnc f 4.96 0.5336361987 6.02378432 3.89621568
CC019/TauUnc f 4.9 0.5336361987 5.96378432 3.83621568
CC024/GeniUnc f 4.65 0.8437529149 6.3319906952 2.9680093048
CC027/GeniUnc f 6.36 0.5336361987 7.42378432 5.29621568
CC028/GeniUnc f 4.5 0.6889213702 5.8733396518 3.1266603482
CC030/GeniUnc f 4.26 0.5336361987 5.32378432 3.19621568
CC032/GeniUnc f 3.86 0.5336361987 4.92378432 2.79621568
CC035/Unc f 5.6 0.5966234078 6.7893470265 4.4106529735
CC036/Unc f 5.0 0.5336361987 6.06378432 3.93621568
CC037/TauUnc f 6.02 0.5336361987 7.08378432 4.95621568
CC040/TauUnc f 6.15 0.5966234078 7.3393470265 4.9606529735
CC041/TauUnc f 6.3 0.5966234078 7.4893470265 5.1106529735
CC045/GeniUnc f 5.4 0.5966234078 6.5893470265 4.2106529735
CC059/TauUnc f 5.6 0.5336361987 6.66378432 4.53621568
CC063/Unc f 4.5333333333 0.6889213702 5.9066729851 3.1599936815
CC071/TauUnc f 4.9333333333 0.6889213702 6.3066729851 3.5599936815




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA