Project measure / variable:   Bennett4   PC_post_HP

ID, description, units MPD:114779   PC_post_HP   plasma phosphocholine amount, post-diet   [µM]  HP group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 17-20wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Bennett4 - plasma phosphocholine amount, post-diet HP group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means5.1411   µM
Median of the strain means5.065   µM
SD of the strain means± 0.82953
Coefficient of variation (CV)0.1614
Min–max range of strain means3.46   –   6.65   µM
Mean sample size per strain4.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 62.5232 2.9773 1.649 0.0606
Residuals 74 133.6063 1.8055


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 5.38 1.5304   5 0.6844 0.2845 3.8, 7.8 0.29
CC002/Unc f 5.58 1.5944   5 0.71302 0.2857 3.2, 7.4 0.53
CC004/TauUnc f 5.54 0.68411   5 0.30594 0.1235 4.7, 6.6 0.48
CC006/TauUnc f 4.75 0.73258   4 0.36629 0.1542 4.2, 5.8 -0.47
CC008/GeniUnc f 6.575 2.5721   4 1.2861 0.3912 4.6, 10.2 1.73
CC011/Unc f 5.42 1.4149   5 0.63277 0.2611 4.3, 7.8 0.34
CC012/GeniUnc f 4.86 1.1415   5 0.51049 0.2349 3.3, 6.1 -0.34
CC019/TauUnc f 4.75 0.75939   4 0.37969 0.1599 3.7, 5.5 -0.47
CC024/GeniUnc f 5.15 0.35355   2   0.25 0.0687 4.9, 5.4 0.01
CC027/GeniUnc f 6.65 1.261   4 0.63048 0.1896 5.0, 7.9 1.82
CC028/GeniUnc f 4.575 0.72744   4 0.36372 0.159 3.6, 5.3 -0.68
CC030/GeniUnc f 4.22 0.99348   5 0.4443 0.2354 2.7, 5.1 -1.11
CC032/GeniUnc f 3.46 0.43359   5 0.19391 0.1253 3.1, 4.1 -2.03
CC035/Unc f 4.58 1.0849   5 0.48518 0.2369 3.1, 6.1 -0.68
CC036/Unc f 3.925 0.94296   4 0.47148 0.2402 2.8, 5.1 -1.47
CC037/TauUnc f 4.98 0.68337   5 0.30561 0.1372 4.1, 6.0 -0.19
CC040/TauUnc f 6.2667 1.193   3 0.6888 0.1904 4.9, 7.1 1.36
CC041/TauUnc f 5.34 1.8889   5 0.84475 0.3537 2.8, 7.4 0.24
CC045/GeniUnc f 4.375 0.65   4 0.325 0.1486 3.8, 5.3 -0.92
CC059/TauUnc f 6.26 1.906   5 0.85241 0.3045 4.8, 9.5 1.35
CC063/Unc f 4.8667 0.55076   3 0.31798 0.1132 4.5, 5.5 -0.33
CC071/TauUnc f 5.6 2.3367   5 1.045 0.4173 3.3, 9.3 0.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 5.38 0.6009144683 6.5773482149 4.1826517851
CC002/Unc f 5.58 0.6009144683 6.7773482149 4.3826517851
CC004/TauUnc f 5.54 0.6009144683 6.7373482149 4.3426517851
CC006/TauUnc f 4.75 0.6718427999 6.0886760007 3.4113239993
CC008/GeniUnc f 6.575 0.6718427999 7.9136760007 5.2363239993
CC011/Unc f 5.42 0.6009144683 6.6173482149 4.2226517851
CC012/GeniUnc f 4.86 0.6009144683 6.0573482149 3.6626517851
CC019/TauUnc f 4.75 0.6718427999 6.0886760007 3.4113239993
CC024/GeniUnc f 5.15 0.9501291994 7.0431737558 3.2568262442
CC027/GeniUnc f 6.65 0.6718427999 7.9886760007 5.3113239993
CC028/GeniUnc f 4.575 0.6718427999 5.9136760007 3.2363239993
CC030/GeniUnc f 4.22 0.6009144683 5.4173482149 3.0226517851
CC032/GeniUnc f 3.46 0.6009144683 4.6573482149 2.2626517851
CC035/Unc f 4.58 0.6009144683 5.7773482149 3.3826517851
CC036/Unc f 3.925 0.6718427999 5.2636760007 2.5863239993
CC037/TauUnc f 4.98 0.6009144683 6.1773482149 3.7826517851
CC040/TauUnc f 6.2666666667 0.7757772427 7.8124365654 4.720896768
CC041/TauUnc f 5.34 0.6009144683 6.5373482149 4.1426517851
CC045/GeniUnc f 4.375 0.6718427999 5.7136760007 3.0363239993
CC059/TauUnc f 6.26 0.6009144683 7.4573482149 5.0626517851
CC063/Unc f 4.8666666667 0.7757772427 6.4124365654 3.320896768
CC071/TauUnc f 5.6 0.6009144683 6.7973482149 4.4026517851




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA