Project measure / variable:   Bennett4   PC_base_HFHS

ID, description, units MPD:114778   PC_base_HFHS   plasma phosphocholine amount, baseline   [µM]  HFHS group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 8-11wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Bennett4 - plasma phosphocholine amount, baseline HFHS group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means5.7916   µM
Median of the strain means5.7875   µM
SD of the strain means± 0.98206
Coefficient of variation (CV)0.1696
Min–max range of strain means3.9   –   7.475   µM
Mean sample size per strain3.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 68.821 3.4411 2.2217 0.0085
Residuals 64 99.1265 1.5489


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 5.34 1.2219   5 0.54644 0.2288 3.7, 6.9 -0.46
CC002/Unc f 5.32 0.21679   5 0.09695 0.0408 5.0, 5.6 -0.48
CC004/TauUnc f 6.52 0.79183   5 0.35412 0.1214 5.4, 7.5 0.74
CC006/TauUnc f 7.1 2.609   4 1.3045 0.3675 5.0, 10.9 1.33
CC008/GeniUnc f 6.35 0.91924   2   0.65 0.1448 5.7, 7.0 0.57
CC011/Unc f 7.175 0.53774   4 0.26887 0.0749 6.5, 7.7 1.41
CC012/GeniUnc f 5.58 1.1649   5 0.52096 0.2088 3.9, 7.1 -0.22
CC019/TauUnc f 4.55 1.1475   4 0.57373 0.2522 3.6, 6.2 -1.26
CC024/GeniUnc f 5.5 0.98995   2   0.7 0.18 4.8, 6.2 -0.3
CC027/GeniUnc f 6.225 2.1562   4 1.0781 0.3464 4.5, 9.3 0.44
CC028/GeniUnc f 6.7 0.80416   4 0.40208 0.12 5.7, 7.4 0.93
CC030/GeniUnc f 4.6 0.4062   5 0.18166 0.0883 4.1, 5.2 -1.21
CC032/GeniUnc f 4.3 0.98319   4 0.4916 0.2286 3.0, 5.2 -1.52
CC035/Unc f 6.28 0.55857   5 0.2498 0.0889 5.7, 7.2 0.5
CC036/Unc f 5.15 1.0149   4 0.50744 0.1971 4.4, 6.6 -0.65
CC037/TauUnc f 4.8 0.38079   5 0.17029 0.0793 4.4, 5.4 -1.01
CC040/TauUnc f 6.475 2.1777   4 1.0889 0.3363 3.6, 8.4 0.7
CC041/TauUnc f 7.475 1.8875   4 0.94373 0.2525 4.8, 8.9 1.71
CC045/GeniUnc f 5.875 0.3594   4 0.1797 0.0612 5.4, 6.2 0.08
CC059/TauUnc f 6.5 0.72111   3 0.41633 0.1109 5.7, 7.1 0.72
CC063/Unc f 3.9 0.0   1   0.0 0.0 3.9, 3.9 -1.93
CC071/TauUnc f 5.7 1.9053   3 1.1 0.3343 4.6, 7.9 -0.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 5.34 0.5565701326 6.4518766586 4.2281233414
CC002/Unc f 5.32 0.5565701326 6.4318766586 4.2081233414
CC004/TauUnc f 6.52 0.5565701326 7.6318766586 5.4081233414
CC006/TauUnc f 7.1 0.6222643254 8.3431158956 5.8568841044
CC008/GeniUnc f 6.35 0.8800146483 8.1080313592 4.5919686408
CC011/Unc f 7.175 0.6222643254 8.4181158956 5.9318841044
CC012/GeniUnc f 5.58 0.5565701326 6.6918766586 4.4681233414
CC019/TauUnc f 4.55 0.6222643254 5.7931158956 3.3068841044
CC024/GeniUnc f 5.5 0.8800146483 7.2580313592 3.7419686408
CC027/GeniUnc f 6.225 0.6222643254 7.4681158956 4.9818841044
CC028/GeniUnc f 6.7 0.6222643254 7.9431158956 5.4568841044
CC030/GeniUnc f 4.6 0.5565701326 5.7118766586 3.4881233414
CC032/GeniUnc f 4.3 0.6222643254 5.5431158956 3.0568841044
CC035/Unc f 6.28 0.5565701326 7.3918766586 5.1681233414
CC036/Unc f 5.15 0.6222643254 6.3931158956 3.9068841044
CC037/TauUnc f 4.8 0.5565701326 5.9118766586 3.6881233414
CC040/TauUnc f 6.475 0.6222643254 7.7181158956 5.2318841044
CC041/TauUnc f 7.475 0.6222643254 8.7181158956 6.2318841044
CC045/GeniUnc f 5.875 0.6222643254 7.1181158956 4.6318841044
CC059/TauUnc f 6.5 0.7185289515 7.9354265939 5.0645734061
CC071/TauUnc f 5.7 0.7185289515 7.1354265939 4.2645734061




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA