Project measure / variable:   Bennett4   PC_base_HP

ID, description, units MPD:114777   PC_base_HP   plasma phosphocholine amount, baseline   [µM]  HP group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 8-11wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Bennett4 - plasma phosphocholine amount, baseline HP group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means5.8099   µM
Median of the strain means5.79   µM
SD of the strain means± 1.1221
Coefficient of variation (CV)0.1931
Min–max range of strain means4.08   –   7.7667   µM
Mean sample size per strain4.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 109.1267 5.1965 3.0983 0.0002
Residuals 68 114.0512 1.6772


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 5.36 0.6229   5 0.27857 0.1162 4.6, 6.0 -0.4
CC002/Unc f 6.22 1.2112   5 0.54166 0.1947 4.9, 7.6 0.37
CC004/TauUnc f 7.6 1.5875   4 0.79373 0.2089 5.5, 9.3 1.6
CC006/TauUnc f 6.875 2.7512   4 1.3756 0.4002 4.4, 10.8 0.95
CC008/GeniUnc f 6.7333 0.87369   3 0.50442 0.1298 6.0, 7.7 0.82
CC011/Unc f 7.66 1.0597   5 0.47392 0.1383 6.1, 8.7 1.65
CC012/GeniUnc f 4.86 0.92358   5 0.41304 0.19 3.8, 5.6 -0.85
CC019/TauUnc f 4.78 0.88713   5 0.39674 0.1856 4.1, 5.8 -0.92
CC024/GeniUnc f 5.5 0.14142   2   0.1 0.0257 5.4, 5.6 -0.28
CC027/GeniUnc f 5.95 0.54467   4 0.27234 0.0915 5.4, 6.7 0.12
CC028/GeniUnc f 6.0 0.65574   3 0.37859 0.1093 5.4, 6.7 0.17
CC030/GeniUnc f 4.68 1.3554   5 0.60614 0.2896 3.5, 6.2 -1.01
CC032/GeniUnc f 4.08 0.42071   5 0.18815 0.1031 3.4, 4.5 -1.54
CC035/Unc f 6.025 0.70887   4 0.35444 0.1177 5.4, 6.9 0.19
CC036/Unc f 5.32 0.56303   5 0.25179 0.1058 4.9, 6.3 -0.44
CC037/TauUnc f 4.52 0.75961   5 0.33971 0.1681 3.8, 5.7 -1.15
CC040/TauUnc f 7.7667 4.2736   3 2.4673 0.5502 5.2, 12.7 1.74
CC041/TauUnc f 7.175 1.4454   4 0.7227 0.2014 6.1, 9.3 1.22
CC045/GeniUnc f 5.7 0.60828   3 0.35119 0.1067 5.3, 6.4 -0.1
CC059/TauUnc f 5.88 1.0895   5 0.48724 0.1853 4.2, 7.2 0.06
CC063/Unc f 4.1667 0.50332   3 0.29059 0.1208 3.7, 4.7 -1.46
CC071/TauUnc f 4.9667 0.20817   3 0.12019 0.0419 4.8, 5.2 -0.75


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 5.36 0.5791758005 6.5157273157 4.2042726843
CC002/Unc f 6.22 0.5791758005 7.3757273157 5.0642726843
CC004/TauUnc f 7.6 0.6475382304 8.8921424206 6.3078575794
CC006/TauUnc f 6.875 0.6475382304 8.1671424206 5.5828575794
CC008/GeniUnc f 6.7333333333 0.7477127432 8.2253708821 5.2412957846
CC011/Unc f 7.66 0.5791758005 8.8157273157 6.5042726843
CC012/GeniUnc f 4.86 0.5791758005 6.0157273157 3.7042726843
CC019/TauUnc f 4.78 0.5791758005 5.9357273157 3.6242726843
CC024/GeniUnc f 5.5 0.9157573476 7.3273653358 3.6726346642
CC027/GeniUnc f 5.95 0.6475382304 7.2421424206 4.6578575794
CC028/GeniUnc f 6.0 0.7477127432 7.4920375488 4.5079624512
CC030/GeniUnc f 4.68 0.5791758005 5.8357273157 3.5242726843
CC032/GeniUnc f 4.08 0.5791758005 5.2357273157 2.9242726843
CC035/Unc f 6.025 0.6475382304 7.3171424206 4.7328575794
CC036/Unc f 5.32 0.5791758005 6.4757273157 4.1642726843
CC037/TauUnc f 4.52 0.5791758005 5.6757273157 3.3642726843
CC040/TauUnc f 7.7666666667 0.7477127432 9.2587042154 6.2746291179
CC041/TauUnc f 7.175 0.6475382304 8.4671424206 5.8828575794
CC045/GeniUnc f 5.7 0.7477127432 7.1920375488 4.2079624512
CC059/TauUnc f 5.88 0.5791758005 7.0357273157 4.7242726843
CC063/Unc f 4.1666666667 0.7477127432 5.6587042154 2.6746291179
CC071/TauUnc f 4.9666666667 0.7477127432 6.4587042154 3.4746291179




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA