Project measure / variable:   Bennett4   BET_base_HP

ID, description, units MPD:114773   BET_base_HP   plasma betaine amount, baseline   [µM]  HP group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 8-11wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Bennett4 - plasma betaine amount, baseline HP group

CC024/GeniUncCC028/GeniUncCC002/UncCC071/TauUncCC036/UncCC011/UncCC035/UncCC006/TauUncCC063/UncCC008/GeniUncCC027/GeniUncCC004/TauUncCC001/UncCC012/GeniUncCC045/GeniUncCC041/TauUncCC059/TauUncCC030/GeniUncCC040/TauUncCC032/GeniUncCC019/TauUncCC037/TauUnc µM 2030405060708090100110120130femalemale


  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means49.785   µM
Median of the strain means44.91   µM
SD of the strain means± 17.055
Coefficient of variation (CV)0.3426
Min–max range of strain means33.9   –   104.2   µM
Mean sample size per strain4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 19712.0301 938.6681 7.9306 < 0.0001
Residuals 79 9350.4442 118.3601


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 22 (22)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
CC001/Unc f 42.22 7.003   5 3.1318 0.1659 31.4, 48.4 -0.44
CC002/Unc f 62.96 12.299   5 5.5003 0.1953 48.2, 78.4 0.77
CC004/TauUnc f 43.74 6.4345   5 2.8776 0.1471 35.1, 51.2 -0.35
CC006/TauUnc f 49.75 7.1636   4 3.5818 0.144 39.7, 56.3 0.0
CC008/GeniUnc f 48.05 14.236   4 7.1179 0.2963 27.2, 59.1 -0.1
CC011/Unc f 53.28 11.224   5 5.0197 0.2107 34.0, 63.3 0.2
CC012/GeniUnc f 40.86 16.261   5 7.2722 0.398 20.7, 60.9 -0.52
CC019/TauUnc f 34.14 5.2291   5 2.3385 0.1532 28.5, 39.5 -0.92
CC024/GeniUnc f 104.2 31.961   2   22.6 0.3067 81.6, 126.8 3.19
CC027/GeniUnc f 46.08 12.887   5 5.7635 0.2797 25.3, 58.8 -0.22
CC028/GeniUnc f 88.62 10.185   4 5.0927 0.1149 73.5, 95.7 2.28
CC030/GeniUnc f 40.26 7.2238   5 3.2306 0.1794 33.7, 52.4 -0.56
CC032/GeniUnc f 35.08 7.2489   5 3.2418 0.2066 25.8, 43.6 -0.86
CC035/Unc f 52.62 12.123   5 5.4217 0.2304 42.3, 73.5 0.17
CC036/Unc f 53.62 13.363   5 5.9759 0.2492 38.3, 64.9 0.22
CC037/TauUnc f 33.9 4.7497   5 2.1241 0.1401 28.4, 39.6 -0.93
CC040/TauUnc f 38.56 10.615   5 4.7474 0.2753 24.1, 49.9 -0.66
CC041/TauUnc f 40.64 10.176   5 4.5507 0.2504 30.0, 56.5 -0.54
CC045/GeniUnc f 40.85 9.6265   4 4.8133 0.2357 26.9, 48.8 -0.52
CC059/TauUnc f 40.3 7.2364   5 3.2362 0.1796 31.8, 51.6 -0.56
CC063/Unc f 48.367 12.716   3 7.3417 0.2629 40.0, 63.0 -0.08
CC071/TauUnc f 57.18 10.799   5 4.8294 0.1889 42.1, 71.9 0.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 42.22 4.8653890439 51.9043146453 32.5356853547
CC002/Unc f 62.96 4.8653890439 72.6443146453 53.2756853547
CC004/TauUnc f 43.74 4.8653890439 53.4243146453 34.0556853547
CC006/TauUnc f 49.75 5.4396703196 60.5773929312 38.9226070688
CC008/GeniUnc f 48.05 5.4396703196 58.8773929312 37.2226070688
CC011/Unc f 53.28 4.8653890439 62.9643146453 43.5956853547
CC012/GeniUnc f 40.86 4.8653890439 50.5443146453 31.1756853547
CC019/TauUnc f 34.14 4.8653890439 43.8243146453 24.4556853547
CC024/GeniUnc f 104.2 7.6928555408 119.5122459284 88.8877540716
CC027/GeniUnc f 46.08 4.8653890439 55.7643146453 36.3956853547
CC028/GeniUnc f 88.625 5.4396703196 99.4523929312 77.7976070688
CC030/GeniUnc f 40.26 4.8653890439 49.9443146453 30.5756853547
CC032/GeniUnc f 35.08 4.8653890439 44.7643146453 25.3956853547
CC035/Unc f 52.62 4.8653890439 62.3043146453 42.9356853547
CC036/Unc f 53.62 4.8653890439 63.3043146453 43.9356853547
CC037/TauUnc f 33.9 4.8653890439 43.5843146453 24.2156853547
CC040/TauUnc f 38.56 4.8653890439 48.2443146453 28.8756853547
CC041/TauUnc f 40.64 4.8653890439 50.3243146453 30.9556853547
CC045/GeniUnc f 40.85 5.4396703196 51.6773929312 30.0226070688
CC059/TauUnc f 40.3 4.8653890439 49.9843146453 30.6156853547
CC063/Unc f 48.3666666667 6.2811902466 60.8690631135 35.8642702198
CC071/TauUnc f 57.18 4.8653890439 66.8643146453 47.4956853547




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA