Project measure / variable:   Bennett4   CHO_post_HP

ID, description, units MPD:114771   CHO_post_HP   plasma choline amount, post-diet   [µM]  HP group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 17-20wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Bennett4 - plasma choline amount, post-diet HP group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means19.086   µM
Median of the strain means18.885   µM
SD of the strain means± 3.1145
Coefficient of variation (CV)0.1632
Min–max range of strain means13.78   –   24.65   µM
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 877.7794 41.799 1.0272 0.4428
Residuals 78 3173.9185 40.6913


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 20.56 6.452   5 2.8854 0.3138 10.7, 27.7 0.47
CC002/Unc f 22.82 6.8383   5 3.0582 0.2997 15.3, 31.0 1.2
CC004/TauUnc f 16.86 2.2645   5 1.0127 0.1343 13.0, 18.9 -0.71
CC006/TauUnc f 16.525 3.6473   4 1.8236 0.2207 11.8, 19.4 -0.82
CC008/GeniUnc f 24.05 9.9524   4 4.9762 0.4138 14.2, 37.6 1.59
CC011/Unc f 17.94 4.7569   5 2.1273 0.2652 14.3, 26.0 -0.37
CC012/GeniUnc f 24.22 16.072   5 7.1875 0.6636 14.6, 52.8 1.65
CC019/TauUnc f 17.66 4.6047   5 2.0593 0.2607 11.3, 23.9 -0.46
CC024/GeniUnc f 16.75 5.3033   2   3.75 0.3166 13.0, 20.5 -0.75
CC027/GeniUnc f 20.16 2.7592   5 1.2339 0.1369 15.6, 22.7 0.34
CC028/GeniUnc f 24.65 11.953   4 5.9764 0.4849 17.5, 42.5 1.79
CC030/GeniUnc f 19.56 7.293   5 3.2615 0.3729 10.2, 30.2 0.15
CC032/GeniUnc f 13.78 3.3641   5 1.5045 0.2441 10.4, 18.6 -1.7
CC035/Unc f 18.3 2.6144   5 1.1692 0.1429 15.7, 22.4 -0.25
CC036/Unc f 19.05 2.4853   4 1.2426 0.1305 16.6, 22.5 -0.01
CC037/TauUnc f 20.3 8.0787   5 3.6129 0.398 14.8, 34.6 0.39
CC040/TauUnc f 21.38 2.7599   5 1.2343 0.1291 18.8, 24.7 0.74
CC041/TauUnc f 16.46 4.3259   5 1.9346 0.2628 11.8, 21.5 -0.84
CC045/GeniUnc f 15.0 1.0456   4 0.52281 0.0697 14.0, 16.0 -1.31
CC059/TauUnc f 20.74 4.1884   5 1.8731 0.2019 14.7, 26.0 0.53
CC063/Unc f 14.4 0.0   3 0.0 0.0 14.4, 14.4 -1.5
CC071/TauUnc f 18.72 2.416   5 1.0805 0.1291 15.6, 21.3 -0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 20.56 2.8527622691 26.2394134015 14.8805865985
CC002/Unc f 22.82 2.8527622691 28.4994134015 17.1405865985
CC004/TauUnc f 16.86 2.8527622691 22.5394134015 11.1805865985
CC006/TauUnc f 16.525 3.1894851787 22.874777219 10.175222781
CC008/GeniUnc f 24.05 3.1894851787 30.399777219 17.700222781
CC011/Unc f 17.94 2.8527622691 23.6194134015 12.2605865985
CC012/GeniUnc f 24.22 2.8527622691 29.8994134015 18.5405865985
CC019/TauUnc f 17.66 2.8527622691 23.3394134015 11.9805865985
CC024/GeniUnc f 16.75 4.5106131967 25.7299410612 7.7700589388
CC027/GeniUnc f 20.16 2.8527622691 25.8394134015 14.4805865985
CC028/GeniUnc f 24.65 3.1894851787 30.999777219 18.300222781
CC030/GeniUnc f 19.56 2.8527622691 25.2394134015 13.8805865985
CC032/GeniUnc f 13.78 2.8527622691 19.4594134015 8.1005865985
CC035/Unc f 18.3 2.8527622691 23.9794134015 12.6205865985
CC036/Unc f 19.05 3.1894851787 25.399777219 12.700222781
CC037/TauUnc f 20.3 2.8527622691 25.9794134015 14.6205865985
CC040/TauUnc f 21.38 2.8527622691 27.0594134015 15.7005865985
CC041/TauUnc f 16.46 2.8527622691 22.1394134015 10.7805865985
CC045/GeniUnc f 15.0 3.1894851787 21.349777219 8.650222781
CC059/TauUnc f 20.74 2.8527622691 26.4194134015 15.0605865985
CC063/Unc f 14.4 3.682900253 21.7320911734 7.0679088266
CC071/TauUnc f 18.72 2.8527622691 24.3994134015 13.0405865985




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA