Project measure / variable:   Bennett4   CHO_base_HFHS

ID, description, units MPD:114770   CHO_base_HFHS   plasma choline amount, baseline   [µM]  HFHS group  
various diets 2 study
Data set, strains Bennett4   CC   22 strains     sex: f     age: 8-11wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Bennett4 - plasma choline amount, baseline HFHS group



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means24.212   µM
Median of the strain means24.51   µM
SD of the strain means± 3.4099
Coefficient of variation (CV)0.1408
Min–max range of strain means18.56   –   32.6   µM
Mean sample size per strain4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 1144.415 54.496 2.2027 0.0064
Residuals 79 1954.542 24.741


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc f 20.52 4.153   5 1.8573 0.2024 15.8, 26.3 -1.08
CC002/Unc f 23.2 5.1995   5 2.3253 0.2241 18.3, 30.3 -0.3
CC004/TauUnc f 19.4 2.493   5 1.1149 0.1285 15.2, 21.9 -1.41
CC006/TauUnc f 24.975 4.0549   4 2.0275 0.1624 20.8, 30.3 0.22
CC008/GeniUnc f 27.7 5.5112   4 2.7556 0.199 23.1, 34.1 1.02
CC011/Unc f 24.96 4.6822   5 2.0939 0.1876 20.8, 32.6 0.22
CC012/GeniUnc f 25.5 3.278   5 1.4659 0.1285 22.3, 29.5 0.38
CC019/TauUnc f 21.76 1.3686   5 0.61205 0.0629 20.4, 23.9 -0.72
CC024/GeniUnc f 26.35 0.21213   2   0.15 0.0081 26.2, 26.5 0.63
CC027/GeniUnc f 24.04 5.2979   5 2.3693 0.2204 17.2, 31.4 -0.05
CC028/GeniUnc f 29.65 6.0984   4 3.0492 0.2057 22.0, 35.0 1.59
CC030/GeniUnc f 21.54 3.1564   5 1.4116 0.1465 16.6, 24.9 -0.78
CC032/GeniUnc f 18.56 2.2722   5 1.0162 0.1224 16.7, 22.3 -1.66
CC035/Unc f 25.52 3.9518   5 1.7673 0.1549 22.0, 30.4 0.38
CC036/Unc f 22.46 2.6492   5 1.1847 0.1179 19.2, 25.6 -0.51
CC037/TauUnc f 21.16 3.6514   5 1.633 0.1726 15.2, 24.9 -0.89
CC040/TauUnc f 32.6 11.221   5 5.0182 0.3442 23.9, 50.6 2.46
CC041/TauUnc f 24.06 5.2946   5 2.3678 0.2201 15.4, 29.9 -0.04
CC045/GeniUnc f 20.425 3.8673   4 1.9336 0.1893 15.3, 24.5 -1.11
CC059/TauUnc f 25.26 3.9784   5 1.7792 0.1575 20.9, 31.4 0.31
CC063/Unc f 25.6 3.9509   3 2.2811 0.1543 21.1, 28.5 0.41
CC071/TauUnc f 27.42 8.5221   5 3.8112 0.3108 18.5, 41.1 0.94


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc f 20.52 2.2244566966 24.9476702993 16.0923297007
CC002/Unc f 23.2 2.2244566966 27.6276702993 18.7723297007
CC004/TauUnc f 19.4 2.2244566966 23.8276702993 14.9723297007
CC006/TauUnc f 24.975 2.4870181933 29.9252858856 20.0247141144
CC008/GeniUnc f 27.7 2.4870181933 32.6502858856 22.7497141144
CC011/Unc f 24.96 2.2244566966 29.3876702993 20.5323297007
CC012/GeniUnc f 25.5 2.2244566966 29.9276702993 21.0723297007
CC019/TauUnc f 21.76 2.2244566966 26.1876702993 17.3323297007
CC024/GeniUnc f 26.35 3.5171748588 33.3507614371 19.3492385629
CC027/GeniUnc f 24.04 2.2244566966 28.4676702993 19.6123297007
CC028/GeniUnc f 29.65 2.4870181933 34.6002858856 24.6997141144
CC030/GeniUnc f 21.54 2.2244566966 25.9676702993 17.1123297007
CC032/GeniUnc f 18.56 2.2244566966 22.9876702993 14.1323297007
CC035/Unc f 25.52 2.2244566966 29.9476702993 21.0923297007
CC036/Unc f 22.46 2.2244566966 26.8876702993 18.0323297007
CC037/TauUnc f 21.16 2.2244566966 25.5876702993 16.7323297007
CC040/TauUnc f 32.6 2.2244566966 37.0276702993 28.1723297007
CC041/TauUnc f 24.06 2.2244566966 28.4876702993 19.6323297007
CC045/GeniUnc f 20.425 2.4870181933 25.3752858856 15.4747141144
CC059/TauUnc f 25.26 2.2244566966 29.6876702993 20.8323297007
CC063/Unc f 25.6 2.8717612467 31.3160977773 19.8839022227
CC071/TauUnc f 27.42 2.2244566966 31.8476702993 22.9923297007




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA